miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 139756 0.66 0.959178
Target:  5'- -gACCAGCGCacugcccgaCGCCGCgCAGguGguGCa -3'
miRNA:   3'- ugUGGUUGUG---------GUGGUG-GUUguCguCG- -5'
5788 3' -53.3 NC_001806.1 + 139466 0.69 0.87551
Target:  5'- uACGcCCGGCaACCugCGCCucAACAGC-GCg -3'
miRNA:   3'- -UGU-GGUUG-UGGugGUGG--UUGUCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 139367 0.67 0.942332
Target:  5'- -gGCCAugGCCAUaaaCGCCGACuaCGGCa -3'
miRNA:   3'- ugUGGUugUGGUG---GUGGUUGucGUCG- -5'
5788 3' -53.3 NC_001806.1 + 138794 0.66 0.955328
Target:  5'- -gGCCGACGCaggCGCCcCCGGCgAGCGuGCg -3'
miRNA:   3'- ugUGGUUGUG---GUGGuGGUUG-UCGU-CG- -5'
5788 3' -53.3 NC_001806.1 + 138361 0.71 0.781629
Target:  5'- aACGCCAGC-CgCAUCACCAACuacucGCAGa -3'
miRNA:   3'- -UGUGGUUGuG-GUGGUGGUUGu----CGUCg -5'
5788 3' -53.3 NC_001806.1 + 138137 0.71 0.791051
Target:  5'- uCACCAACcCCGCCAaccuccCCGGCuggacGCGGCu -3'
miRNA:   3'- uGUGGUUGuGGUGGU------GGUUGu----CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 137494 0.66 0.966178
Target:  5'- -gACCAGCaACC-CCGCCucgcuggagGACcuGCAGCg -3'
miRNA:   3'- ugUGGUUG-UGGuGGUGG---------UUGu-CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 136766 0.68 0.909602
Target:  5'- aGCGCgugaAAgAUCGCCGCCuGCAGCuGCc -3'
miRNA:   3'- -UGUGg---UUgUGGUGGUGGuUGUCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 136343 0.66 0.961732
Target:  5'- -gGCCAGCGCCAgCucaaaaaacccgggGCCGGCGcgcuccGCGGCc -3'
miRNA:   3'- ugUGGUUGUGGUgG--------------UGGUUGU------CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 134678 0.67 0.94091
Target:  5'- cCGCCAcCGCgaaGCCGCgAuaacuggacuggccGCAGCAGCg -3'
miRNA:   3'- uGUGGUuGUGg--UGGUGgU--------------UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 134157 0.68 0.908979
Target:  5'- cCACCAauagaccagaggcGCGCgCACCuccuCCGACgcccAGCAGCu -3'
miRNA:   3'- uGUGGU-------------UGUG-GUGGu---GGUUG----UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 133614 0.72 0.701988
Target:  5'- -gGCCAGCGaccccuugccccCCACUGCCuuccGCGGCGGCg -3'
miRNA:   3'- ugUGGUUGU------------GGUGGUGGu---UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 133410 0.67 0.942332
Target:  5'- cCGCgGGC-CCGCguaCACC-ACGGCGGCa -3'
miRNA:   3'- uGUGgUUGuGGUG---GUGGuUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 133272 0.72 0.752553
Target:  5'- -gGCCAACGCCGu--CCGGCuGCGGCa -3'
miRNA:   3'- ugUGGUUGUGGUgguGGUUGuCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 133042 0.72 0.712265
Target:  5'- gACACgugCAACGCCugcCCugCGcuGCGGCAGCu -3'
miRNA:   3'- -UGUG---GUUGUGGu--GGugGU--UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 132737 0.67 0.932429
Target:  5'- gGC-CCGGCGugGCC-UCGGCGGCAGCc -3'
miRNA:   3'- -UGuGGUUGUggUGGuGGUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 132454 0.77 0.44711
Target:  5'- cGCGCCGGCGCUcgucGCCcuuuuCCGGCAGUGGCa -3'
miRNA:   3'- -UGUGGUUGUGG----UGGu----GGUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 131688 0.66 0.959178
Target:  5'- aGCGUCAGCGCCAUUACCcuuuAC-GCGGUa -3'
miRNA:   3'- -UGUGGUUGUGGUGGUGGu---UGuCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 131587 0.68 0.909602
Target:  5'- cCACCGG-GCC-CgGCCAggcACGGCAGCa -3'
miRNA:   3'- uGUGGUUgUGGuGgUGGU---UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 131323 0.7 0.844091
Target:  5'- aGCGCCAACcCCAaCGCUGACaucauccuggaGGCGGCg -3'
miRNA:   3'- -UGUGGUUGuGGUgGUGGUUG-----------UCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.