miRNA display CGI


Results 61 - 80 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 122989 0.67 0.946909
Target:  5'- gGCACUcguagGGCAUCGCCGCCcAUGGUgaGGCc -3'
miRNA:   3'- -UGUGG-----UUGUGGUGGUGGuUGUCG--UCG- -5'
5788 3' -53.3 NC_001806.1 + 122874 0.73 0.670825
Target:  5'- cCGCC-GCGCCACgGCCGagaAgAGCGGCg -3'
miRNA:   3'- uGUGGuUGUGGUGgUGGU---UgUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 122845 0.8 0.320242
Target:  5'- uGCGCCGGCACCagGCUAUUaAACAGCAGCc -3'
miRNA:   3'- -UGUGGUUGUGG--UGGUGG-UUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 122718 0.69 0.882806
Target:  5'- uACGCUgaGGCACCACguCCGcCGGCGcGCa -3'
miRNA:   3'- -UGUGG--UUGUGGUGguGGUuGUCGU-CG- -5'
5788 3' -53.3 NC_001806.1 + 121320 0.67 0.942332
Target:  5'- --cCCGAC-CCaACCACCgAACAGCucGCg -3'
miRNA:   3'- uguGGUUGuGG-UGGUGG-UUGUCGu-CG- -5'
5788 3' -53.3 NC_001806.1 + 119932 0.7 0.826268
Target:  5'- uGCGCCGcagaacgcgucguGCGCCcCCACCAGCugucucccgcugGGCAGg -3'
miRNA:   3'- -UGUGGU-------------UGUGGuGGUGGUUG------------UCGUCg -5'
5788 3' -53.3 NC_001806.1 + 119798 0.71 0.76237
Target:  5'- uGguCCuGCGCCACCACUAcggaACcaAGCAGCg -3'
miRNA:   3'- -UguGGuUGUGGUGGUGGU----UG--UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 119629 0.69 0.889867
Target:  5'- gGCcCCAGCGCC-CCACgGGCccGGgGGCg -3'
miRNA:   3'- -UGuGGUUGUGGuGGUGgUUG--UCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 119520 0.7 0.809433
Target:  5'- uACGCCAggGCGCCcugguucaccagGCCGUCAGCGGgGGCg -3'
miRNA:   3'- -UGUGGU--UGUGG------------UGGUGGUUGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 119189 0.71 0.781629
Target:  5'- gGCGCCGcCGCC-CCGCCGGCcgcgaaggaGGCuGCg -3'
miRNA:   3'- -UGUGGUuGUGGuGGUGGUUG---------UCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 119111 0.73 0.69165
Target:  5'- --cCCAACACgCGCUacgcgGCCGACAGCAcGCg -3'
miRNA:   3'- uguGGUUGUG-GUGG-----UGGUUGUCGU-CG- -5'
5788 3' -53.3 NC_001806.1 + 118767 0.66 0.962792
Target:  5'- cCGCCcugauGCGCgGCCGCCccggacucggGACGGCcGCa -3'
miRNA:   3'- uGUGGu----UGUGgUGGUGG----------UUGUCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 116137 0.67 0.937505
Target:  5'- gGCAUCucGCGCC-CCGau-GCGGCGGCg -3'
miRNA:   3'- -UGUGGu-UGUGGuGGUgguUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 115624 0.69 0.889867
Target:  5'- uGCGCCAGCgACC-CCGCCcuccuCcGCAGUg -3'
miRNA:   3'- -UGUGGUUG-UGGuGGUGGuu---GuCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 115520 0.7 0.834862
Target:  5'- cCACgGcCACCGCCGCCAgcgacguACAGUuuaAGCg -3'
miRNA:   3'- uGUGgUuGUGGUGGUGGU-------UGUCG---UCG- -5'
5788 3' -53.3 NC_001806.1 + 115455 0.74 0.607843
Target:  5'- -gGCCGACAUCGCCGCCAaACAucGCuGCc -3'
miRNA:   3'- ugUGGUUGUGGUGGUGGU-UGU--CGuCG- -5'
5788 3' -53.3 NC_001806.1 + 114368 0.83 0.227978
Target:  5'- gGCGCCAACACCgcguccACCACCAACAuGC-GCa -3'
miRNA:   3'- -UGUGGUUGUGG------UGGUGGUUGU-CGuCG- -5'
5788 3' -53.3 NC_001806.1 + 114327 0.67 0.9271
Target:  5'- aACGCaCAACGgCGCUGCUcugcuCGGCGGCg -3'
miRNA:   3'- -UGUG-GUUGUgGUGGUGGuu---GUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 114204 0.68 0.921518
Target:  5'- cGCACCcccuGCACC-CgGCCAAUcuGGUGGCc -3'
miRNA:   3'- -UGUGGu---UGUGGuGgUGGUUG--UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 113501 0.75 0.545521
Target:  5'- uUACCuGCugCagGCCGCCAuacACGGCAGCg -3'
miRNA:   3'- uGUGGuUGugG--UGGUGGU---UGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.