miRNA display CGI


Results 81 - 100 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 113430 0.7 0.809433
Target:  5'- cACGCCAugGCCcccGCCACCAucgccgccguucGCGG-GGCg -3'
miRNA:   3'- -UGUGGUugUGG---UGGUGGU------------UGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 113102 0.78 0.410564
Target:  5'- -gGCCGGCcCCGCCGCagacauGCAGCAGCu -3'
miRNA:   3'- ugUGGUUGuGGUGGUGgu----UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 112931 0.7 0.81303
Target:  5'- cCGCCAGCugUuuuuuugggggaaggACCGCCAGguGCuGCg -3'
miRNA:   3'- uGUGGUUGugG---------------UGGUGGUUguCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 112768 0.68 0.913886
Target:  5'- cGCAUCu-CGCCGCCACCAACguucccuacccccuGGUGGg -3'
miRNA:   3'- -UGUGGuuGUGGUGGUGGUUG--------------UCGUCg -5'
5788 3' -53.3 NC_001806.1 + 112612 0.66 0.967469
Target:  5'- -gACguGgGCCGCCACCuGCuggagaugcaggaggAGCAGCu -3'
miRNA:   3'- ugUGguUgUGGUGGUGGuUG---------------UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 112089 0.68 0.921518
Target:  5'- uCGCCAguuGCG-CGCCAuCCAACAGCucGCu -3'
miRNA:   3'- uGUGGU---UGUgGUGGU-GGUUGUCGu-CG- -5'
5788 3' -53.3 NC_001806.1 + 112028 0.66 0.966178
Target:  5'- cCACCGAgGCCAUCGCCcugcucACGGgGGa -3'
miRNA:   3'- uGUGGUUgUGGUGGUGGu-----UGUCgUCg -5'
5788 3' -53.3 NC_001806.1 + 110941 0.68 0.894668
Target:  5'- gGCGCCGGCcuguauccugGCCGCCAUCGuCGGCuacuacguuacgugGGCg -3'
miRNA:   3'- -UGUGGUUG----------UGGUGGUGGUuGUCG--------------UCG- -5'
5788 3' -53.3 NC_001806.1 + 108607 0.66 0.969341
Target:  5'- cCGCUAGCACCAgggaggUCACCccuguCAGCcGCg -3'
miRNA:   3'- uGUGGUUGUGGU------GGUGGuu---GUCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 108035 0.7 0.835711
Target:  5'- aGCAgCAAauCGCCGCCggGCCGACGGagGGCg -3'
miRNA:   3'- -UGUgGUU--GUGGUGG--UGGUUGUCg-UCG- -5'
5788 3' -53.3 NC_001806.1 + 106775 0.72 0.752553
Target:  5'- cGCGCUgGACGCCuCCGCCgcGugGGCGGCu -3'
miRNA:   3'- -UGUGG-UUGUGGuGGUGG--UugUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 106336 0.66 0.956897
Target:  5'- -gGCCGcgugauACACCGCCcccCCGACcgccgguuggggcccGGCGGCa -3'
miRNA:   3'- ugUGGU------UGUGGUGGu--GGUUG---------------UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 105010 0.74 0.639361
Target:  5'- aACGCCAGCGCC-CCGgCG--AGCGGCu -3'
miRNA:   3'- -UGUGGUUGUGGuGGUgGUugUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 103789 0.73 0.681259
Target:  5'- uGCugCAgacccccggGCGgCGCCGCCG-CGGCGGCg -3'
miRNA:   3'- -UGugGU---------UGUgGUGGUGGUuGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 103107 0.68 0.915685
Target:  5'- gAUAUCGACggggagcucgGCCGCCugC-AUGGCGGCg -3'
miRNA:   3'- -UGUGGUUG----------UGGUGGugGuUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 103001 0.75 0.535311
Target:  5'- cGCGCgCGGCAuCCGCCucuUCGGCGGCGGCc -3'
miRNA:   3'- -UGUG-GUUGU-GGUGGu--GGUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 102810 0.69 0.859448
Target:  5'- gUACCAggucccgaACACCACCcCCGACGagccggucgccccGCGGCc -3'
miRNA:   3'- uGUGGU--------UGUGGUGGuGGUUGU-------------CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 102410 0.67 0.925452
Target:  5'- gACGCCAGCGCUccguguucguagcgGCCcCCGcCGGCcGCg -3'
miRNA:   3'- -UGUGGUUGUGG--------------UGGuGGUuGUCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 101849 0.69 0.889867
Target:  5'- cGCACCAGCGCCGCCu-----GGCGGg -3'
miRNA:   3'- -UGUGGUUGUGGUGGugguugUCGUCg -5'
5788 3' -53.3 NC_001806.1 + 101713 0.66 0.962792
Target:  5'- -aGCCAAUgcguGCCugCugCGcCAGCAGg -3'
miRNA:   3'- ugUGGUUG----UGGugGugGUuGUCGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.