miRNA display CGI


Results 101 - 120 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 101137 0.77 0.44711
Target:  5'- -gGCCAGCACCcgccCCACCucGCAGcCAGCg -3'
miRNA:   3'- ugUGGUUGUGGu---GGUGGu-UGUC-GUCG- -5'
5788 3' -53.3 NC_001806.1 + 100894 0.66 0.95124
Target:  5'- cGCGCaCAGCGCgACgugCGCgAACAGCGuGCg -3'
miRNA:   3'- -UGUG-GUUGUGgUG---GUGgUUGUCGU-CG- -5'
5788 3' -53.3 NC_001806.1 + 100649 0.7 0.809433
Target:  5'- cCGCCGcCGCUcgGCCACCAGgcucCAGCGGUc -3'
miRNA:   3'- uGUGGUuGUGG--UGGUGGUU----GUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 100483 0.72 0.701988
Target:  5'- gGCACCGGuCACC-CUGCgGcGCGGCAGCg -3'
miRNA:   3'- -UGUGGUU-GUGGuGGUGgU-UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 100139 0.75 0.545521
Target:  5'- -gGCUAugGCCcCCACCAAC-GCGGCu -3'
miRNA:   3'- ugUGGUugUGGuGGUGGUUGuCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 98539 0.74 0.597364
Target:  5'- cACGCCGACGCCaacGCCGCCAuguuuGCGGg -3'
miRNA:   3'- -UGUGGUUGUGG---UGGUGGUugu--CGUCg -5'
5788 3' -53.3 NC_001806.1 + 98480 0.68 0.903269
Target:  5'- aGguCCAGCGCCGCaACCAGCuGCAcgaccuGCg -3'
miRNA:   3'- -UguGGUUGUGGUGgUGGUUGuCGU------CG- -5'
5788 3' -53.3 NC_001806.1 + 98350 0.85 0.159225
Target:  5'- cGCGCCGACAUCACCACCGuCAGCAc- -3'
miRNA:   3'- -UGUGGUUGUGGUGGUGGUuGUCGUcg -5'
5788 3' -53.3 NC_001806.1 + 98276 0.72 0.742624
Target:  5'- gACACCGGCGCUACuuCACCuuCGGUgggGGCu -3'
miRNA:   3'- -UGUGGUUGUGGUG--GUGGuuGUCG---UCG- -5'
5788 3' -53.3 NC_001806.1 + 98011 0.78 0.401721
Target:  5'- aACGCCAuCGCCucgGCCACCGugGGcCGGCg -3'
miRNA:   3'- -UGUGGUuGUGG---UGGUGGUugUC-GUCG- -5'
5788 3' -53.3 NC_001806.1 + 97849 0.68 0.899351
Target:  5'- cGCAUCAAgACCACCuccuccaucgaguucGCCAGgCuGCAGUu -3'
miRNA:   3'- -UGUGGUUgUGGUGG---------------UGGUU-GuCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 97679 0.66 0.962792
Target:  5'- -gGCCAGCcgcaguACUACCugGCCAAUGGgGGCu -3'
miRNA:   3'- ugUGGUUG------UGGUGG--UGGUUGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 97446 0.67 0.932429
Target:  5'- aGCGCCcgucggucuGCACCAUgACCAAgUGGCAGg -3'
miRNA:   3'- -UGUGGu--------UGUGGUGgUGGUU-GUCGUCg -5'
5788 3' -53.3 NC_001806.1 + 97348 0.66 0.95124
Target:  5'- cGCGCgCGACcUCACCACCAaggcccgggccACGGC-GCc -3'
miRNA:   3'- -UGUG-GUUGuGGUGGUGGU-----------UGUCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 97301 0.73 0.66978
Target:  5'- cACACCAGCuaCGCCGCCGACcgcuucaAGCAGg -3'
miRNA:   3'- -UGUGGUUGugGUGGUGGUUG-------UCGUCg -5'
5788 3' -53.3 NC_001806.1 + 97078 0.7 0.835711
Target:  5'- -gGCCAACGCCGCgACCcGCAcgAGCc -3'
miRNA:   3'- ugUGGUUGUGGUGgUGGuUGUcgUCG- -5'
5788 3' -53.3 NC_001806.1 + 96373 0.69 0.867984
Target:  5'- uGCGCCAggGCGCCcCCGC--GCGGgGGCg -3'
miRNA:   3'- -UGUGGU--UGUGGuGGUGguUGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 95196 0.68 0.915685
Target:  5'- cGCGCguGCuacgACCACCACCuGACGacgccgcucuuGCGGCg -3'
miRNA:   3'- -UGUGguUG----UGGUGGUGG-UUGU-----------CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 94965 0.71 0.791051
Target:  5'- cGCGCCGGCcagACCACCAUgGACGcguuuGcCAGCa -3'
miRNA:   3'- -UGUGGUUG---UGGUGGUGgUUGU-----C-GUCG- -5'
5788 3' -53.3 NC_001806.1 + 94492 0.74 0.62885
Target:  5'- uCGCgCGGCGCCACCGCCGcGCuGgAGCg -3'
miRNA:   3'- uGUG-GUUGUGGUGGUGGU-UGuCgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.