Results 81 - 100 of 341 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5788 | 3' | -53.3 | NC_001806.1 | + | 51801 | 0.75 | 0.576495 |
Target: 5'- -gGCCAaguACGCCGCCACCGugGcCGGCc -3' miRNA: 3'- ugUGGU---UGUGGUGGUGGUugUcGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 1588 | 0.75 | 0.586912 |
Target: 5'- cGCcCCAGCGCCACguaCACgGgccGCAGCGGCg -3' miRNA: 3'- -UGuGGUUGUGGUG---GUGgU---UGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 69235 | 0.75 | 0.587956 |
Target: 5'- uGCugCAGCucggggagcagcccuCCGCCGgcgcCCAGCAGCGGCu -3' miRNA: 3'- -UGugGUUGu--------------GGUGGU----GGUUGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 4325 | 0.74 | 0.597364 |
Target: 5'- -gGCCGGcCACCGCCGCgCGGgccCGGCGGCg -3' miRNA: 3'- ugUGGUU-GUGGUGGUG-GUU---GUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 39071 | 0.74 | 0.597364 |
Target: 5'- aGCGCCAcgaGCACCACCccgGCCAccACGGCGa- -3' miRNA: 3'- -UGUGGU---UGUGGUGG---UGGU--UGUCGUcg -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 98539 | 0.74 | 0.597364 |
Target: 5'- cACGCCGACGCCaacGCCGCCAuguuuGCGGg -3' miRNA: 3'- -UGUGGUUGUGG---UGGUGGUugu--CGUCg -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 2767 | 0.74 | 0.597364 |
Target: 5'- gGCGCgGGCggGCCugCGCCG-CGGCGGCc -3' miRNA: 3'- -UGUGgUUG--UGGugGUGGUuGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 79315 | 0.75 | 0.566119 |
Target: 5'- uCACCGACGCCACCcCCGGCG--AGCc -3' miRNA: 3'- uGUGGUUGUGGUGGuGGUUGUcgUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 23724 | 0.75 | 0.566119 |
Target: 5'- uGCGCCGGgccCGCCcCCGCCGcccaggccgcguGCGGCGGCg -3' miRNA: 3'- -UGUGGUU---GUGGuGGUGGU------------UGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 3239 | 0.75 | 0.566119 |
Target: 5'- aGCACCAGCGCguCGCgCACgAACcGCAGCu -3' miRNA: 3'- -UGUGGUUGUG--GUG-GUGgUUGuCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 85717 | 0.76 | 0.505113 |
Target: 5'- aGCGCCGGCAcCCACCGCCccgAACccuGCGGUc -3' miRNA: 3'- -UGUGGUUGU-GGUGGUGG---UUGu--CGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 27273 | 0.76 | 0.505113 |
Target: 5'- -gGCCAAUcgGCgGCCGCCAGC-GCGGCg -3' miRNA: 3'- ugUGGUUG--UGgUGGUGGUUGuCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 23035 | 0.76 | 0.52517 |
Target: 5'- uGCGCgGGgACCugCgcgugGCCGGCGGCAGCg -3' miRNA: 3'- -UGUGgUUgUGGugG-----UGGUUGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 103001 | 0.75 | 0.535311 |
Target: 5'- cGCGCgCGGCAuCCGCCucuUCGGCGGCGGCc -3' miRNA: 3'- -UGUG-GUUGU-GGUGGu--GGUUGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 100139 | 0.75 | 0.545521 |
Target: 5'- -gGCUAugGCCcCCACCAAC-GCGGCu -3' miRNA: 3'- ugUGGUugUGGuGGUGGUUGuCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 113501 | 0.75 | 0.545521 |
Target: 5'- uUACCuGCugCagGCCGCCAuacACGGCAGCg -3' miRNA: 3'- uGUGGuUGugG--UGGUGGU---UGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 24812 | 0.75 | 0.550649 |
Target: 5'- cCGCCGGCGCCGCCcgggauucgcuggGCCucggccacgggccGCAGCGGCa -3' miRNA: 3'- uGUGGUUGUGGUGG-------------UGGu------------UGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 28975 | 0.75 | 0.555792 |
Target: 5'- -gACCGAgACCugC-CgGACAGCAGCg -3' miRNA: 3'- ugUGGUUgUGGugGuGgUUGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 92355 | 0.75 | 0.555792 |
Target: 5'- -gGCCAGacgGCCcCCGCCGAgAGCAGCu -3' miRNA: 3'- ugUGGUUg--UGGuGGUGGUUgUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 12429 | 0.75 | 0.566119 |
Target: 5'- cCACgAGCACCAggcCCugCAACGgGCGGCa -3' miRNA: 3'- uGUGgUUGUGGU---GGugGUUGU-CGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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