Results 121 - 140 of 341 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5788 | 3' | -53.3 | NC_001806.1 | + | 2315 | 0.73 | 0.66978 |
Target: 5'- -gGCCc-CGCCGCCGgccagguccucgcCCGGCAGCGGCg -3' miRNA: 3'- ugUGGuuGUGGUGGU-------------GGUUGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 37231 | 0.73 | 0.670825 |
Target: 5'- cCGCCAGaCGCCGCCGCgAACA-CAGUu -3' miRNA: 3'- uGUGGUU-GUGGUGGUGgUUGUcGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 29869 | 0.74 | 0.618341 |
Target: 5'- aGCGCCccccucGGCGCCcaucggGCCACaCGGCAGCAGUn -3' miRNA: 3'- -UGUGG------UUGUGG------UGGUG-GUUGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 3595 | 0.74 | 0.618341 |
Target: 5'- gGCGCCGuacccggcggGCACCGCgCGCUcgcccggugcGGCGGCGGCg -3' miRNA: 3'- -UGUGGU----------UGUGGUG-GUGG----------UUGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 21902 | 0.74 | 0.618341 |
Target: 5'- cGCAUCgAGCGCCGCCggGCCcgcGCGGCGGUg -3' miRNA: 3'- -UGUGG-UUGUGGUGG--UGGu--UGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 3239 | 0.75 | 0.566119 |
Target: 5'- aGCACCAGCGCguCGCgCACgAACcGCAGCu -3' miRNA: 3'- -UGUGGUUGUG--GUG-GUGgUUGuCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 23724 | 0.75 | 0.566119 |
Target: 5'- uGCGCCGGgccCGCCcCCGCCGcccaggccgcguGCGGCGGCg -3' miRNA: 3'- -UGUGGUU---GUGGuGGUGGU------------UGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 79315 | 0.75 | 0.566119 |
Target: 5'- uCACCGACGCCACCcCCGGCG--AGCc -3' miRNA: 3'- uGUGGUUGUGGUGGuGGUUGUcgUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 128102 | 0.75 | 0.576495 |
Target: 5'- gACA-CAACACCcccucgACCACCAACAaCAGCg -3' miRNA: 3'- -UGUgGUUGUGG------UGGUGGUUGUcGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 31454 | 0.75 | 0.576495 |
Target: 5'- gACACgGGCACCACaCACCAGCGGg--- -3' miRNA: 3'- -UGUGgUUGUGGUG-GUGGUUGUCgucg -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 23222 | 0.75 | 0.576495 |
Target: 5'- -gGCCAGCGCaccggaCGCCGCCGACgcgcuGGCGGCc -3' miRNA: 3'- ugUGGUUGUG------GUGGUGGUUG-----UCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 51801 | 0.75 | 0.576495 |
Target: 5'- -gGCCAaguACGCCGCCACCGugGcCGGCc -3' miRNA: 3'- ugUGGU---UGUGGUGGUGGUugUcGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 1588 | 0.75 | 0.586912 |
Target: 5'- cGCcCCAGCGCCACguaCACgGgccGCAGCGGCg -3' miRNA: 3'- -UGuGGUUGUGGUG---GUGgU---UGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 69235 | 0.75 | 0.587956 |
Target: 5'- uGCugCAGCucggggagcagcccuCCGCCGgcgcCCAGCAGCGGCu -3' miRNA: 3'- -UGugGUUGu--------------GGUGGU----GGUUGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 4325 | 0.74 | 0.597364 |
Target: 5'- -gGCCGGcCACCGCCGCgCGGgccCGGCGGCg -3' miRNA: 3'- ugUGGUU-GUGGUGGUG-GUU---GUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 39071 | 0.74 | 0.597364 |
Target: 5'- aGCGCCAcgaGCACCACCccgGCCAccACGGCGa- -3' miRNA: 3'- -UGUGGU---UGUGGUGG---UGGU--UGUCGUcg -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 98539 | 0.74 | 0.597364 |
Target: 5'- cACGCCGACGCCaacGCCGCCAuguuuGCGGg -3' miRNA: 3'- -UGUGGUUGUGG---UGGUGGUugu--CGUCg -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 2767 | 0.74 | 0.597364 |
Target: 5'- gGCGCgGGCggGCCugCGCCG-CGGCGGCc -3' miRNA: 3'- -UGUGgUUG--UGGugGUGGUuGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 81022 | 0.74 | 0.597364 |
Target: 5'- cGCGCCuguUACCGCCuaCAACAGCAGUu -3' miRNA: 3'- -UGUGGuu-GUGGUGGugGUUGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 115455 | 0.74 | 0.607843 |
Target: 5'- -gGCCGACAUCGCCGCCAaACAucGCuGCc -3' miRNA: 3'- ugUGGUUGUGGUGGUGGU-UGU--CGuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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