miRNA display CGI


Results 41 - 60 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 63023 0.82 0.251791
Target:  5'- aACGCaCAGCGCguugcuggucuuCAUCGCCGACAGCAGCa -3'
miRNA:   3'- -UGUG-GUUGUG------------GUGGUGGUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 56834 0.82 0.245652
Target:  5'- cCGCCAACACCGCCgcgGCCAggGCGGCcGCg -3'
miRNA:   3'- uGUGGUUGUGGUGG---UGGU--UGUCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 114368 0.83 0.227978
Target:  5'- gGCGCCAACACCgcguccACCACCAACAuGC-GCa -3'
miRNA:   3'- -UGUGGUUGUGG------UGGUGGUUGU-CGuCG- -5'
5788 3' -53.3 NC_001806.1 + 98350 0.85 0.159225
Target:  5'- cGCGCCGACAUCACCACCGuCAGCAc- -3'
miRNA:   3'- -UGUGGUUGUGGUGGUGGUuGUCGUcg -5'
5788 3' -53.3 NC_001806.1 + 81730 0.87 0.12219
Target:  5'- cGCGCCAGCACCaACCACCcaccaAAUAGCGGCc -3'
miRNA:   3'- -UGUGGUUGUGG-UGGUGG-----UUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 113102 0.78 0.410564
Target:  5'- -gGCCGGCcCCGCCGCagacauGCAGCAGCu -3'
miRNA:   3'- ugUGGUUGuGGUGGUGgu----UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 24409 0.78 0.419527
Target:  5'- cGCGCCGccgcuGCGCCugUGCCG-CGGCGGCa -3'
miRNA:   3'- -UGUGGU-----UGUGGugGUGGUuGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 23035 0.76 0.52517
Target:  5'- uGCGCgGGgACCugCgcgugGCCGGCGGCAGCg -3'
miRNA:   3'- -UGUGgUUgUGGugG-----UGGUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 27273 0.76 0.505113
Target:  5'- -gGCCAAUcgGCgGCCGCCAGC-GCGGCg -3'
miRNA:   3'- ugUGGUUG--UGgUGGUGGUUGuCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 85717 0.76 0.505113
Target:  5'- aGCGCCGGCAcCCACCGCCccgAACccuGCGGUc -3'
miRNA:   3'- -UGUGGUUGU-GGUGGUGG---UUGu--CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 76487 0.76 0.494223
Target:  5'- -gGCCGAUACCAaggaCGCCGuggugcgcgccaaACAGCAGCg -3'
miRNA:   3'- ugUGGUUGUGGUg---GUGGU-------------UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 126140 0.77 0.475672
Target:  5'- gGCGgCGAgGCCGgCGCCGACAcGCGGCg -3'
miRNA:   3'- -UGUgGUUgUGGUgGUGGUUGU-CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 1369 0.77 0.473739
Target:  5'- aGCACCuccacggccccCGCCGCCGCCAGCAcGguGCc -3'
miRNA:   3'- -UGUGGuu---------GUGGUGGUGGUUGU-CguCG- -5'
5788 3' -53.3 NC_001806.1 + 130813 0.77 0.47181
Target:  5'- aGCACCAugGCCGCgCGCCugcauugggacuCGGCGGCc -3'
miRNA:   3'- -UGUGGUugUGGUG-GUGGuu----------GUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 4621 0.77 0.467006
Target:  5'- gACGCCgAugGCCGCCACCGGCcgugacgacgucuccGCGGCg -3'
miRNA:   3'- -UGUGG-UugUGGUGGUGGUUGu--------------CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 9698 0.77 0.456526
Target:  5'- cACACCGACaACC-CCAgUgcaGACAGCAGCa -3'
miRNA:   3'- -UGUGGUUG-UGGuGGUgG---UUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 77363 0.77 0.45558
Target:  5'- uACGCCAAgGCCACagGCCAgacgggcgcgggcGCGGCGGCc -3'
miRNA:   3'- -UGUGGUUgUGGUGg-UGGU-------------UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 132454 0.77 0.44711
Target:  5'- cGCGCCGGCGCUcgucGCCcuuuuCCGGCAGUGGCa -3'
miRNA:   3'- -UGUGGUUGUGG----UGGu----GGUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 101137 0.77 0.44711
Target:  5'- -gGCCAGCACCcgccCCACCucGCAGcCAGCg -3'
miRNA:   3'- ugUGGUUGUGGu---GGUGGu-UGUC-GUCG- -5'
5788 3' -53.3 NC_001806.1 + 38616 0.78 0.428607
Target:  5'- gGCugC-ACACCACCACCGGCcgGGUGGUg -3'
miRNA:   3'- -UGugGuUGUGGUGGUGGUUG--UCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.