miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 5' -63.9 NC_001806.1 + 21872 0.66 0.568179
Target:  5'- gCGGCgaggaccCCCGCgGccucCGCGGGCCGCa- -3'
miRNA:   3'- -GCCGa------GGGCGgUca--GCGCUCGGCGcc -5'
5788 5' -63.9 NC_001806.1 + 9759 0.66 0.568179
Target:  5'- gGGCg-CCGUgGGUUGgGGGCgCGUGGg -3'
miRNA:   3'- gCCGagGGCGgUCAGCgCUCG-GCGCC- -5'
5788 5' -63.9 NC_001806.1 + 65241 0.66 0.568179
Target:  5'- gCGGCg-CCGUguGUCGCGAcaggaacaacaGCCGCc- -3'
miRNA:   3'- -GCCGagGGCGguCAGCGCU-----------CGGCGcc -5'
5788 5' -63.9 NC_001806.1 + 41983 0.66 0.559682
Target:  5'- aCGGcCUCCCuGcCCAGgggcgagggcugcucCGUGcuGGCCGCGGg -3'
miRNA:   3'- -GCC-GAGGG-C-GGUCa--------------GCGC--UCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 73040 0.66 0.55874
Target:  5'- aGGCaaaaCCC-CC-GUCG-GGGCCGCGGu -3'
miRNA:   3'- gCCGa---GGGcGGuCAGCgCUCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 15697 0.66 0.55874
Target:  5'- gCGGgUCCagGCCGGUCGgGuGUacgGCGGg -3'
miRNA:   3'- -GCCgAGGg-CGGUCAGCgCuCGg--CGCC- -5'
5788 5' -63.9 NC_001806.1 + 100111 0.66 0.55874
Target:  5'- cCGGCUgaccgCCCGCC--UgGCGGuCCGCGGc -3'
miRNA:   3'- -GCCGA-----GGGCGGucAgCGCUcGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 74187 0.66 0.55874
Target:  5'- uGGCUUCgGCCGccGUCGUGc-CCGUGGu -3'
miRNA:   3'- gCCGAGGgCGGU--CAGCGCucGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 50864 0.66 0.557799
Target:  5'- aCGcGCgcaccaccCCCGCCaAGUucugggcggacucCGCGcGGCCGCGGa -3'
miRNA:   3'- -GC-CGa-------GGGCGG-UCA-------------GCGC-UCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 41158 0.67 0.549346
Target:  5'- gGGauaUgCGUCGGgguccaCGCGGGCCGCGGg -3'
miRNA:   3'- gCCga-GgGCGGUCa-----GCGCUCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 23730 0.67 0.549346
Target:  5'- gGGCccgccCCCGCCgcccaGGcCGCGuGCgGCGGc -3'
miRNA:   3'- gCCGa----GGGCGG-----UCaGCGCuCGgCGCC- -5'
5788 5' -63.9 NC_001806.1 + 53762 0.67 0.549346
Target:  5'- uGGUcaauaCCGCCGacgccGUCGaCGAGCCGCaGGc -3'
miRNA:   3'- gCCGag---GGCGGU-----CAGC-GCUCGGCG-CC- -5'
5788 5' -63.9 NC_001806.1 + 50398 0.67 0.540002
Target:  5'- uGGCUCUCGgUGGUCGUgGGGgCGCGc -3'
miRNA:   3'- gCCGAGGGCgGUCAGCG-CUCgGCGCc -5'
5788 5' -63.9 NC_001806.1 + 4737 0.67 0.540002
Target:  5'- gCGGC-CCCGggccggggcCCGGUCGCcGGCgGCGu -3'
miRNA:   3'- -GCCGaGGGC---------GGUCAGCGcUCGgCGCc -5'
5788 5' -63.9 NC_001806.1 + 65395 0.67 0.540002
Target:  5'- aCGGCggUCCCGCC-GUCGCu-GCCGg-- -3'
miRNA:   3'- -GCCG--AGGGCGGuCAGCGcuCGGCgcc -5'
5788 5' -63.9 NC_001806.1 + 48317 0.67 0.538139
Target:  5'- gCGGCUCCgCGCCuGUCcuuucuccCCGCGGg -3'
miRNA:   3'- -GCCGAGG-GCGGuCAGcgcuc---GGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 21138 0.67 0.530712
Target:  5'- cCGGCUCCCcggGCCccacCGaCGGGCCGCc- -3'
miRNA:   3'- -GCCGAGGG---CGGuca-GC-GCUCGGCGcc -5'
5788 5' -63.9 NC_001806.1 + 5589 0.67 0.530712
Target:  5'- cCGGCa--CGCCGGgggccCGUG-GCCGCGGc -3'
miRNA:   3'- -GCCGaggGCGGUCa----GCGCuCGGCGCC- -5'
5788 5' -63.9 NC_001806.1 + 19180 0.67 0.530712
Target:  5'- ---aUCCCGCCgaucgggagAGcUCGUGAGCCGCaGGu -3'
miRNA:   3'- gccgAGGGCGG---------UC-AGCGCUCGGCG-CC- -5'
5788 5' -63.9 NC_001806.1 + 135063 0.67 0.530712
Target:  5'- cCGGC-CCCGCgGGgacgCGcCGGGCCGgaaauCGGc -3'
miRNA:   3'- -GCCGaGGGCGgUCa---GC-GCUCGGC-----GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.