miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5789 3' -61 NC_001806.1 + 131909 0.66 0.751426
Target:  5'- gCCUCC-CCGCUggaGCCccuggagaacccgacUCUguggCGGGCg -3'
miRNA:   3'- -GGAGGaGGCGAaggCGG---------------AGGa---GCCCG- -5'
5789 3' -61 NC_001806.1 + 47539 0.72 0.378506
Target:  5'- cCUUCCcuaCGCUUCCgGCCacccgcgacggCCUCGGGCu -3'
miRNA:   3'- -GGAGGag-GCGAAGG-CGGa----------GGAGCCCG- -5'
5789 3' -61 NC_001806.1 + 22701 0.71 0.410797
Target:  5'- -gUCCgCCGCgcCCGCCUCCcccgCGGGg -3'
miRNA:   3'- ggAGGaGGCGaaGGCGGAGGa---GCCCg -5'
5789 3' -61 NC_001806.1 + 102996 0.71 0.427572
Target:  5'- -aUCC-CCGCgcgcggcaUCCGCCUCUUCGGcgGCg -3'
miRNA:   3'- ggAGGaGGCGa-------AGGCGGAGGAGCC--CG- -5'
5789 3' -61 NC_001806.1 + 106771 0.71 0.43611
Target:  5'- gCUCCg-CGCUggaCGCCUCCgccgcgUGGGCg -3'
miRNA:   3'- gGAGGagGCGAag-GCGGAGGa-----GCCCG- -5'
5789 3' -61 NC_001806.1 + 38795 0.71 0.43611
Target:  5'- aCC-CCguUCCGCUUCCGCggggaCC-CGGGCg -3'
miRNA:   3'- -GGaGG--AGGCGAAGGCGga---GGaGCCCG- -5'
5789 3' -61 NC_001806.1 + 84871 0.7 0.47121
Target:  5'- gCUCCUCUGCggCCGgCgggaCUCuGGGCg -3'
miRNA:   3'- gGAGGAGGCGaaGGCgGag--GAG-CCCG- -5'
5789 3' -61 NC_001806.1 + 66825 0.7 0.47121
Target:  5'- gCCggcCCggguggCCGgUgugcgCCGCCUCCUgGGGCc -3'
miRNA:   3'- -GGa--GGa-----GGCgAa----GGCGGAGGAgCCCG- -5'
5789 3' -61 NC_001806.1 + 137565 0.7 0.516996
Target:  5'- aCCUCaCgaagCgCGCccuggCCGCCUCCggGGGCg -3'
miRNA:   3'- -GGAG-Ga---G-GCGaa---GGCGGAGGagCCCG- -5'
5789 3' -61 NC_001806.1 + 136638 0.72 0.370703
Target:  5'- gCCaCC-CCgGCgauaUCCGCCUCC-CGGGCg -3'
miRNA:   3'- -GGaGGaGG-CGa---AGGCGGAGGaGCCCG- -5'
5789 3' -61 NC_001806.1 + 69830 0.73 0.355431
Target:  5'- cCCggCCacgCCGCUgUCCGCgCUucuccCCUCGGGCa -3'
miRNA:   3'- -GGa-GGa--GGCGA-AGGCG-GA-----GGAGCCCG- -5'
5789 3' -61 NC_001806.1 + 5031 0.73 0.347962
Target:  5'- cCCUCCUCCGUcUCCGCgCcCCacccgaGGGCc -3'
miRNA:   3'- -GGAGGAGGCGaAGGCG-GaGGag----CCCG- -5'
5789 3' -61 NC_001806.1 + 103192 0.78 0.171052
Target:  5'- aCCUgCUCCGCcgCCGUCUCC-CGGGg -3'
miRNA:   3'- -GGAgGAGGCGaaGGCGGAGGaGCCCg -5'
5789 3' -61 NC_001806.1 + 30703 0.76 0.212034
Target:  5'- uCCUCCUCUGCcUCUuCCUCCUCGGc- -3'
miRNA:   3'- -GGAGGAGGCGaAGGcGGAGGAGCCcg -5'
5789 3' -61 NC_001806.1 + 87366 0.74 0.292298
Target:  5'- cCCUCCUCCuCUggCCGCUccucgUCCUccCGGGCu -3'
miRNA:   3'- -GGAGGAGGcGAa-GGCGG-----AGGA--GCCCG- -5'
5789 3' -61 NC_001806.1 + 15247 0.74 0.309591
Target:  5'- cCCUCCUCCuCUUCCuCCUCCUCcaguccaauacuuGGCa -3'
miRNA:   3'- -GGAGGAGGcGAAGGcGGAGGAGc------------CCG- -5'
5789 3' -61 NC_001806.1 + 4111 0.74 0.312319
Target:  5'- gCCUCCUCCGCcUCgggCGCCccccagaggCC-CGGGCg -3'
miRNA:   3'- -GGAGGAGGCGaAG---GCGGa--------GGaGCCCG- -5'
5789 3' -61 NC_001806.1 + 38687 0.73 0.319221
Target:  5'- cCCUCCU-CG-UUCCGCCcCC-CGGGCg -3'
miRNA:   3'- -GGAGGAgGCgAAGGCGGaGGaGCCCG- -5'
5789 3' -61 NC_001806.1 + 79641 0.73 0.340607
Target:  5'- gCCUCCUCCcgcGCUUCUGCCgcuUCUUcgucCGGGUc -3'
miRNA:   3'- -GGAGGAGG---CGAAGGCGG---AGGA----GCCCG- -5'
5789 3' -61 NC_001806.1 + 79120 0.73 0.347962
Target:  5'- cCUUCCUCgCGCga--GCUaUCCUCGGGCg -3'
miRNA:   3'- -GGAGGAG-GCGaaggCGG-AGGAGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.