Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5791 | 5' | -49.2 | NC_001806.1 | + | 41379 | 0.69 | 0.969578 |
Target: 5'- gGGGCAUcacGGGGCCcuGGGCGCGGAuGCg -3' miRNA: 3'- -UUCGUAuc-UCUCGG--UCCGUGUUUuUG- -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 87015 | 0.69 | 0.96269 |
Target: 5'- -cGCAUGGcGAGCCAGucccGCAgGAGGAUg -3' miRNA: 3'- uuCGUAUCuCUCGGUC----CGUgUUUUUG- -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 87467 | 0.69 | 0.958867 |
Target: 5'- aAAGCccuucUGGucGGCCAGGCGCAGcAGGCa -3' miRNA: 3'- -UUCGu----AUCucUCGGUCCGUGUU-UUUG- -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 39205 | 0.68 | 0.984765 |
Target: 5'- -uGCGUucuuGGGGGCCGGGCcccgccGCAGAAuACa -3' miRNA: 3'- uuCGUAu---CUCUCGGUCCG------UGUUUU-UG- -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 5111 | 0.68 | 0.980545 |
Target: 5'- gGGGCccGGGGAGCCGgGGCGCu---GCu -3' miRNA: 3'- -UUCGuaUCUCUCGGU-CCGUGuuuuUG- -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 81650 | 0.68 | 0.978133 |
Target: 5'- cGGUcgGGAGGGCUguguGGgGCGAAGGCg -3' miRNA: 3'- uUCGuaUCUCUCGGu---CCgUGUUUUUG- -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 1511 | 0.68 | 0.978133 |
Target: 5'- cGGGCuccAGcAGGGCgCGGGCGCAAAAGu -3' miRNA: 3'- -UUCGua-UC-UCUCG-GUCCGUGUUUUUg -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 25370 | 0.68 | 0.978133 |
Target: 5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3' miRNA: 3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 25336 | 0.68 | 0.978133 |
Target: 5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3' miRNA: 3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 25302 | 0.68 | 0.978133 |
Target: 5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3' miRNA: 3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 25268 | 0.68 | 0.978133 |
Target: 5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3' miRNA: 3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 91146 | 0.68 | 0.975507 |
Target: 5'- -cGCGUGgccgcuguucGAGGGCCAGGaCACGGccGCg -3' miRNA: 3'- uuCGUAU----------CUCUCGGUCC-GUGUUuuUG- -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 25098 | 0.68 | 0.978133 |
Target: 5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3' miRNA: 3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 25132 | 0.68 | 0.978133 |
Target: 5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3' miRNA: 3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 25166 | 0.68 | 0.978133 |
Target: 5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3' miRNA: 3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 25200 | 0.68 | 0.978133 |
Target: 5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3' miRNA: 3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 25234 | 0.68 | 0.978133 |
Target: 5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3' miRNA: 3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 62240 | 0.67 | 0.986594 |
Target: 5'- aGAGCGggggAGAGGGCUGGGgcCGCGGAAu- -3' miRNA: 3'- -UUCGUa---UCUCUCGGUCC--GUGUUUUug -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 3541 | 0.67 | 0.98825 |
Target: 5'- -cGCG-GGGGAGgCGGGCGCGGcGGACa -3' miRNA: 3'- uuCGUaUCUCUCgGUCCGUGUU-UUUG- -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 33980 | 0.67 | 0.98825 |
Target: 5'- cGGGCcgGGGGucGCCGGG-GCAGGGGCg -3' miRNA: 3'- -UUCGuaUCUCu-CGGUCCgUGUUUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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