miRNA display CGI


Results 41 - 60 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5791 5' -49.2 NC_001806.1 + 66716 0.67 0.99228
Target:  5'- uGGCGguaAGuGAauaCCAGGUACAGAAACg -3'
miRNA:   3'- uUCGUa--UCuCUc--GGUCCGUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 67222 0.67 0.991082
Target:  5'- gGGGCGcgcUGGuGGGCCAGGUgagGCAGGucGGCg -3'
miRNA:   3'- -UUCGU---AUCuCUCGGUCCG---UGUUU--UUG- -5'
5791 5' -49.2 NC_001806.1 + 81650 0.68 0.978133
Target:  5'- cGGUcgGGAGGGCUguguGGgGCGAAGGCg -3'
miRNA:   3'- uUCGuaUCUCUCGGu---CCgUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 83904 0.73 0.860685
Target:  5'- -uGCAcGGAGGGUC-GGCGCGGGGGCg -3'
miRNA:   3'- uuCGUaUCUCUCGGuCCGUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 87015 0.69 0.96269
Target:  5'- -cGCAUGGcGAGCCAGucccGCAgGAGGAUg -3'
miRNA:   3'- uuCGUAUCuCUCGGUC----CGUgUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 87467 0.69 0.958867
Target:  5'- aAAGCccuucUGGucGGCCAGGCGCAGcAGGCa -3'
miRNA:   3'- -UUCGu----AUCucUCGGUCCGUGUU-UUUG- -5'
5791 5' -49.2 NC_001806.1 + 88793 0.66 0.994292
Target:  5'- uGGCcuuccGGAGUCAGGCcCAGGAGCg -3'
miRNA:   3'- uUCGuauc-UCUCGGUCCGuGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 89270 0.7 0.950434
Target:  5'- uGGCuccgcGAGGGCCggcGGGCGCAAAAAa -3'
miRNA:   3'- uUCGuau--CUCUCGG---UCCGUGUUUUUg -5'
5791 5' -49.2 NC_001806.1 + 91146 0.68 0.975507
Target:  5'- -cGCGUGgccgcuguucGAGGGCCAGGaCACGGccGCg -3'
miRNA:   3'- uuCGUAU----------CUCUCGGUCC-GUGUUuuUG- -5'
5791 5' -49.2 NC_001806.1 + 94256 0.69 0.969578
Target:  5'- -uGC-UAGAGuacGCguGGCGCGAGGGCg -3'
miRNA:   3'- uuCGuAUCUCu--CGguCCGUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 101924 0.66 0.993347
Target:  5'- uGGGCGUcaagacacAGGGcGGCCAGGCcgGGAAACa -3'
miRNA:   3'- -UUCGUA--------UCUC-UCGGUCCGugUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 109228 0.66 0.995858
Target:  5'- uAGCGU--GGGGCCGGGCgggGCGGAAu- -3'
miRNA:   3'- uUCGUAucUCUCGGUCCG---UGUUUUug -5'
5791 5' -49.2 NC_001806.1 + 121391 0.66 0.994292
Target:  5'- -cGCGaAGAcccccccgGAGCCGGGCGCGugcuGCg -3'
miRNA:   3'- uuCGUaUCU--------CUCGGUCCGUGUuuu-UG- -5'
5791 5' -49.2 NC_001806.1 + 128277 0.67 0.989742
Target:  5'- cAGCAcGGcgcGAGCCGGGC-CGAcGACg -3'
miRNA:   3'- uUCGUaUCu--CUCGGUCCGuGUUuUUG- -5'
5791 5' -49.2 NC_001806.1 + 128726 0.67 0.989742
Target:  5'- cGGCAUaAGAGcucGCCuGGCGUAAAAGCa -3'
miRNA:   3'- uUCGUA-UCUCu--CGGuCCGUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 139827 0.7 0.94092
Target:  5'- gGGGCcgGGAGcGCCAGgaccgccugccGCGCGGAGGCg -3'
miRNA:   3'- -UUCGuaUCUCuCGGUC-----------CGUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 147610 0.66 0.994292
Target:  5'- -cGCGgccuGAGCCAGGgACGAGuGCg -3'
miRNA:   3'- uuCGUaucuCUCGGUCCgUGUUUuUG- -5'
5791 5' -49.2 NC_001806.1 + 147679 0.7 0.945814
Target:  5'- -cGCcccGGGGGCCGGGgCGCGGGGGCg -3'
miRNA:   3'- uuCGuauCUCUCGGUCC-GUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 147792 0.66 0.995126
Target:  5'- gGGGCGgggGGcGGAGCCuGGCAUggGcGCc -3'
miRNA:   3'- -UUCGUa--UC-UCUCGGuCCGUGuuUuUG- -5'
5791 5' -49.2 NC_001806.1 + 151189 0.72 0.884369
Target:  5'- -cGCAggcGGAGGGCgAGGCGCGgcggAAGGCg -3'
miRNA:   3'- uuCGUa--UCUCUCGgUCCGUGU----UUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.