miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5791 5' -49.2 NC_001806.1 + 62620 0.73 0.852297
Target:  5'- aGGGgGUGGGuGGGCucCAGGCACGGGAGCg -3'
miRNA:   3'- -UUCgUAUCU-CUCG--GUCCGUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 62277 0.7 0.935749
Target:  5'- cAGCAggGGAGAGCguGGgACGGcGACg -3'
miRNA:   3'- uUCGUa-UCUCUCGguCCgUGUUuUUG- -5'
5791 5' -49.2 NC_001806.1 + 62240 0.67 0.986594
Target:  5'- aGAGCGggggAGAGGGCUGGGgcCGCGGAAu- -3'
miRNA:   3'- -UUCGUa---UCUCUCGGUCC--GUGUUUUug -5'
5791 5' -49.2 NC_001806.1 + 61348 0.66 0.994292
Target:  5'- uGGCGUcGGGGGGUgGGGCG-GAAAACa -3'
miRNA:   3'- uUCGUA-UCUCUCGgUCCGUgUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 57497 0.77 0.671207
Target:  5'- cGAGgGUGGGGGcGCCAGGCACAcacauGAACc -3'
miRNA:   3'- -UUCgUAUCUCU-CGGUCCGUGUu----UUUG- -5'
5791 5' -49.2 NC_001806.1 + 57005 0.67 0.99228
Target:  5'- -cGCAUAGgcggcgcccAGuGCCAGGCACuggguGGCc -3'
miRNA:   3'- uuCGUAUC---------UCuCGGUCCGUGuuu--UUG- -5'
5791 5' -49.2 NC_001806.1 + 55936 0.74 0.797384
Target:  5'- cGGCAaAGcGAGaCCGGGCAUGAAAACg -3'
miRNA:   3'- uUCGUaUCuCUC-GGUCCGUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 53999 0.73 0.841045
Target:  5'- -cGCAUGGGGAaaguGCCcacgaggcccgcgaGGGCACGAGGACc -3'
miRNA:   3'- uuCGUAUCUCU----CGG--------------UCCGUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 45319 0.67 0.99228
Target:  5'- cGGCGaGGAGGG-CGGGCGCGAu--- -3'
miRNA:   3'- uUCGUaUCUCUCgGUCCGUGUUuuug -5'
5791 5' -49.2 NC_001806.1 + 44373 0.71 0.912269
Target:  5'- -uGCccGGGGAGCCAGcGCGUAGGAACg -3'
miRNA:   3'- uuCGuaUCUCUCGGUC-CGUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 41379 0.69 0.969578
Target:  5'- gGGGCAUcacGGGGCCcuGGGCGCGGAuGCg -3'
miRNA:   3'- -UUCGUAuc-UCUCGG--UCCGUGUUUuUG- -5'
5791 5' -49.2 NC_001806.1 + 39205 0.68 0.984765
Target:  5'- -uGCGUucuuGGGGGCCGGGCcccgccGCAGAAuACa -3'
miRNA:   3'- uuCGUAu---CUCUCGGUCCG------UGUUUU-UG- -5'
5791 5' -49.2 NC_001806.1 + 33980 0.67 0.98825
Target:  5'- cGGGCcgGGGGucGCCGGG-GCAGGGGCg -3'
miRNA:   3'- -UUCGuaUCUCu-CGGUCCgUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 33367 0.75 0.746734
Target:  5'- gGGGCccGGAGAGCCGcGGCACccGGACg -3'
miRNA:   3'- -UUCGuaUCUCUCGGU-CCGUGuuUUUG- -5'
5791 5' -49.2 NC_001806.1 + 32443 1.09 0.009226
Target:  5'- cAAGCAUAGAGAGCCAGGCACAAAAACa -3'
miRNA:   3'- -UUCGUAUCUCUCGGUCCGUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 30425 0.7 0.935749
Target:  5'- cGGGCGUGGAGGG-UGGGCACGGGc-- -3'
miRNA:   3'- -UUCGUAUCUCUCgGUCCGUGUUUuug -5'
5791 5' -49.2 NC_001806.1 + 28301 0.66 0.995126
Target:  5'- --uCAUAcacGGGAGCCGGGCGCcauguuGGGGCg -3'
miRNA:   3'- uucGUAU---CUCUCGGUCCGUGu-----UUUUG- -5'
5791 5' -49.2 NC_001806.1 + 26167 0.66 0.996497
Target:  5'- gGAGCGgggGGAGgagcGGCCAGacGC-CGAAAACg -3'
miRNA:   3'- -UUCGUa--UCUC----UCGGUC--CGuGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 25941 0.75 0.757146
Target:  5'- cGGGCGUGG-GGGCgGGGCcGCGGGAGCg -3'
miRNA:   3'- -UUCGUAUCuCUCGgUCCG-UGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 25637 0.66 0.994292
Target:  5'- gGGGCuggGGAGGGCUgGGGCugGGGAGg -3'
miRNA:   3'- -UUCGua-UCUCUCGG-UCCGugUUUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.