Results 41 - 60 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5791 | 5' | -49.2 | NC_001806.1 | + | 33367 | 0.75 | 0.746734 |
Target: 5'- gGGGCccGGAGAGCCGcGGCACccGGACg -3' miRNA: 3'- -UUCGuaUCUCUCGGU-CCGUGuuUUUG- -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 21193 | 0.75 | 0.736204 |
Target: 5'- cGAGC--GGGGGGCCcucgggugGGGCGCGGAGACg -3' miRNA: 3'- -UUCGuaUCUCUCGG--------UCCGUGUUUUUG- -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 2836 | 0.77 | 0.671207 |
Target: 5'- gGGGCGUGGAGgggGGCgCGGGCGCGGGGAg -3' miRNA: 3'- -UUCGUAUCUC---UCG-GUCCGUGUUUUUg -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 57497 | 0.77 | 0.671207 |
Target: 5'- cGAGgGUGGGGGcGCCAGGCACAcacauGAACc -3' miRNA: 3'- -UUCgUAUCUCU-CGGUCCGUGUu----UUUG- -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 30425 | 0.7 | 0.935749 |
Target: 5'- cGGGCGUGGAGGG-UGGGCACGGGc-- -3' miRNA: 3'- -UUCGUAUCUCUCgGUCCGUGUUUuug -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 139827 | 0.7 | 0.94092 |
Target: 5'- gGGGCcgGGAGcGCCAGgaccgccugccGCGCGGAGGCg -3' miRNA: 3'- -UUCGuaUCUCuCGGUC-----------CGUGUUUUUG- -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 25234 | 0.68 | 0.978133 |
Target: 5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3' miRNA: 3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 25200 | 0.68 | 0.978133 |
Target: 5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3' miRNA: 3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 25166 | 0.68 | 0.978133 |
Target: 5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3' miRNA: 3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 25132 | 0.68 | 0.978133 |
Target: 5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3' miRNA: 3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 25098 | 0.68 | 0.978133 |
Target: 5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3' miRNA: 3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 91146 | 0.68 | 0.975507 |
Target: 5'- -cGCGUGgccgcuguucGAGGGCCAGGaCACGGccGCg -3' miRNA: 3'- uuCGUAU----------CUCUCGGUCC-GUGUUuuUG- -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 16877 | 0.69 | 0.972659 |
Target: 5'- gGGGC--GGGGAGuCCAGGCACGc---- -3' miRNA: 3'- -UUCGuaUCUCUC-GGUCCGUGUuuuug -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 94256 | 0.69 | 0.969578 |
Target: 5'- -uGC-UAGAGuacGCguGGCGCGAGGGCg -3' miRNA: 3'- uuCGuAUCUCu--CGguCCGUGUUUUUG- -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 41379 | 0.69 | 0.969578 |
Target: 5'- gGGGCAUcacGGGGCCcuGGGCGCGGAuGCg -3' miRNA: 3'- -UUCGUAuc-UCUCGG--UCCGUGUUUuUG- -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 87015 | 0.69 | 0.96269 |
Target: 5'- -cGCAUGGcGAGCCAGucccGCAgGAGGAUg -3' miRNA: 3'- uuCGUAUCuCUCGGUC----CGUgUUUUUG- -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 87467 | 0.69 | 0.958867 |
Target: 5'- aAAGCccuucUGGucGGCCAGGCGCAGcAGGCa -3' miRNA: 3'- -UUCGu----AUCucUCGGUCCGUGUU-UUUG- -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 89270 | 0.7 | 0.950434 |
Target: 5'- uGGCuccgcGAGGGCCggcGGGCGCAAAAAa -3' miRNA: 3'- uUCGuau--CUCUCGG---UCCGUGUUUUUg -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 147679 | 0.7 | 0.945814 |
Target: 5'- -cGCcccGGGGGCCGGGgCGCGGGGGCg -3' miRNA: 3'- uuCGuauCUCUCGGUCC-GUGUUUUUG- -5' |
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5791 | 5' | -49.2 | NC_001806.1 | + | 32443 | 1.09 | 0.009226 |
Target: 5'- cAAGCAUAGAGAGCCAGGCACAAAAACa -3' miRNA: 3'- -UUCGUAUCUCUCGGUCCGUGUUUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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