miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5791 5' -49.2 NC_001806.1 + 33980 0.67 0.98825
Target:  5'- cGGGCcgGGGGucGCCGGG-GCAGGGGCg -3'
miRNA:   3'- -UUCGuaUCUCu-CGGUCCgUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 62240 0.67 0.986594
Target:  5'- aGAGCGggggAGAGGGCUGGGgcCGCGGAAu- -3'
miRNA:   3'- -UUCGUa---UCUCUCGGUCC--GUGUUUUug -5'
5791 5' -49.2 NC_001806.1 + 25006 0.67 0.986594
Target:  5'- cGGGCcgGGAcgGGGCgGGGCGCuuguGAGACc -3'
miRNA:   3'- -UUCGuaUCU--CUCGgUCCGUGu---UUUUG- -5'
5791 5' -49.2 NC_001806.1 + 39205 0.68 0.984765
Target:  5'- -uGCGUucuuGGGGGCCGGGCcccgccGCAGAAuACa -3'
miRNA:   3'- uuCGUAu---CUCUCGGUCCG------UGUUUU-UG- -5'
5791 5' -49.2 NC_001806.1 + 5111 0.68 0.980545
Target:  5'- gGGGCccGGGGAGCCGgGGCGCu---GCu -3'
miRNA:   3'- -UUCGuaUCUCUCGGU-CCGUGuuuuUG- -5'
5791 5' -49.2 NC_001806.1 + 25098 0.68 0.978133
Target:  5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3'
miRNA:   3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5'
5791 5' -49.2 NC_001806.1 + 25132 0.68 0.978133
Target:  5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3'
miRNA:   3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5'
5791 5' -49.2 NC_001806.1 + 81650 0.68 0.978133
Target:  5'- cGGUcgGGAGGGCUguguGGgGCGAAGGCg -3'
miRNA:   3'- uUCGuaUCUCUCGGu---CCgUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 1511 0.68 0.978133
Target:  5'- cGGGCuccAGcAGGGCgCGGGCGCAAAAGu -3'
miRNA:   3'- -UUCGua-UC-UCUCG-GUCCGUGUUUUUg -5'
5791 5' -49.2 NC_001806.1 + 25370 0.68 0.978133
Target:  5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3'
miRNA:   3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5'
5791 5' -49.2 NC_001806.1 + 25336 0.68 0.978133
Target:  5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3'
miRNA:   3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5'
5791 5' -49.2 NC_001806.1 + 25302 0.68 0.978133
Target:  5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3'
miRNA:   3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5'
5791 5' -49.2 NC_001806.1 + 25268 0.68 0.978133
Target:  5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3'
miRNA:   3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5'
5791 5' -49.2 NC_001806.1 + 25234 0.68 0.978133
Target:  5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3'
miRNA:   3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5'
5791 5' -49.2 NC_001806.1 + 25200 0.68 0.978133
Target:  5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3'
miRNA:   3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5'
5791 5' -49.2 NC_001806.1 + 25166 0.68 0.978133
Target:  5'- gGGGCGggAGGGGGCgAGGgGCGGGAGg -3'
miRNA:   3'- -UUCGUa-UCUCUCGgUCCgUGUUUUUg -5'
5791 5' -49.2 NC_001806.1 + 91146 0.68 0.975507
Target:  5'- -cGCGUGgccgcuguucGAGGGCCAGGaCACGGccGCg -3'
miRNA:   3'- uuCGUAU----------CUCUCGGUCC-GUGUUuuUG- -5'
5791 5' -49.2 NC_001806.1 + 16877 0.69 0.972659
Target:  5'- gGGGC--GGGGAGuCCAGGCACGc---- -3'
miRNA:   3'- -UUCGuaUCUCUC-GGUCCGUGUuuuug -5'
5791 5' -49.2 NC_001806.1 + 94256 0.69 0.969578
Target:  5'- -uGC-UAGAGuacGCguGGCGCGAGGGCg -3'
miRNA:   3'- uuCGuAUCUCu--CGguCCGUGUUUUUG- -5'
5791 5' -49.2 NC_001806.1 + 41379 0.69 0.969578
Target:  5'- gGGGCAUcacGGGGCCcuGGGCGCGGAuGCg -3'
miRNA:   3'- -UUCGUAuc-UCUCGG--UCCGUGUUUuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.