miRNA display CGI


Results 61 - 80 of 194 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5792 3' -45.3 NC_001806.1 + 75558 0.67 0.999913
Target:  5'- cGAAGGGAcgGCCGgggaccacuccccCAGCGgGcGCGCCc -3'
miRNA:   3'- -CUUUUUUuuUGGU-------------GUCGCgUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 42633 0.67 0.999916
Target:  5'- --------cGCCGCGGCGgCGUcGCGUCc -3'
miRNA:   3'- cuuuuuuuuUGGUGUCGC-GUA-CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 99806 0.67 0.999916
Target:  5'- --------cACCugAGgGCGauagUGCGCCa -3'
miRNA:   3'- cuuuuuuuuUGGugUCgCGU----ACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 77368 0.67 0.999916
Target:  5'- -----cAAGGCCACaggccagacgGGCGCggGCGCg -3'
miRNA:   3'- cuuuuuUUUUGGUG----------UCGCGuaCGCGg -5'
5792 3' -45.3 NC_001806.1 + 116457 0.67 0.999889
Target:  5'- ----cGAGGGCCA-AGCGacggaCGUGCGCCu -3'
miRNA:   3'- cuuuuUUUUUGGUgUCGC-----GUACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 68276 0.67 0.999889
Target:  5'- -------uGGCCACGGCcaaGCugcGCGCCg -3'
miRNA:   3'- cuuuuuuuUUGGUGUCG---CGua-CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 63004 0.67 0.999889
Target:  5'- uGAAGGGAcgggccccgcGAACgCACAGCGCGuUGCuggucuucaucGCCg -3'
miRNA:   3'- -CUUUUUU----------UUUG-GUGUCGCGU-ACG-----------CGG- -5'
5792 3' -45.3 NC_001806.1 + 30452 0.67 0.999933
Target:  5'- ---------cCCGCGGCGCcgcccccuccgGCGCCg -3'
miRNA:   3'- cuuuuuuuuuGGUGUCGCGua---------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 56302 0.67 0.999937
Target:  5'- -----cGGAGCCcCAGCaCcUGCGCCa -3'
miRNA:   3'- cuuuuuUUUUGGuGUCGcGuACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 45116 0.67 0.999953
Target:  5'- ---cGAGuAGCgACGGC-CGUGUGCCa -3'
miRNA:   3'- cuuuUUUuUUGgUGUCGcGUACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 22047 0.67 0.999953
Target:  5'- ---cGGGGAGCCGUGGC-CcgGCGCCg -3'
miRNA:   3'- cuuuUUUUUUGGUGUCGcGuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 139557 0.67 0.999953
Target:  5'- --cGGGAGcGCCACgAGCGCgAUGaCGUCa -3'
miRNA:   3'- cuuUUUUUuUGGUG-UCGCG-UAC-GCGG- -5'
5792 3' -45.3 NC_001806.1 + 144525 0.67 0.999937
Target:  5'- ----uAAAAGCgGgGGCGCGgccGUGCCg -3'
miRNA:   3'- cuuuuUUUUUGgUgUCGCGUa--CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 47706 0.67 0.999937
Target:  5'- --------cACCGCcaGGCGCAcaUGCGCg -3'
miRNA:   3'- cuuuuuuuuUGGUG--UCGCGU--ACGCGg -5'
5792 3' -45.3 NC_001806.1 + 46111 0.67 0.999937
Target:  5'- -----cGGGGCCu--GCGCggGCGCCu -3'
miRNA:   3'- cuuuuuUUUUGGuguCGCGuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 135765 0.67 0.999937
Target:  5'- cGGAAGGccuggcGAAGCUGCGGCGCc--CGCCc -3'
miRNA:   3'- -CUUUUU------UUUUGGUGUCGCGuacGCGG- -5'
5792 3' -45.3 NC_001806.1 + 24719 0.67 0.999937
Target:  5'- --cGGAGGGACUuuuGCGCccGCGCCc -3'
miRNA:   3'- cuuUUUUUUUGGuguCGCGuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 24278 0.67 0.999937
Target:  5'- ---------cCCGCcGUGCAgUGCGCCg -3'
miRNA:   3'- cuuuuuuuuuGGUGuCGCGU-ACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 122282 0.67 0.999937
Target:  5'- cGAAAGGAGGCCagcgACAGCGCGaugagGgGCa -3'
miRNA:   3'- cUUUUUUUUUGG----UGUCGCGUa----CgCGg -5'
5792 3' -45.3 NC_001806.1 + 30504 0.67 0.999937
Target:  5'- cGAGcAGGAGGCgGCGGUGCGUccgaggaagagGCGCg -3'
miRNA:   3'- -CUUuUUUUUUGgUGUCGCGUA-----------CGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.