Results 81 - 100 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5792 | 3' | -45.3 | NC_001806.1 | + | 62641 | 0.67 | 0.999953 |
Target: 5'- --------cACgGgAGCGCcUGCGCCa -3' miRNA: 3'- cuuuuuuuuUGgUgUCGCGuACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 135765 | 0.67 | 0.999937 |
Target: 5'- cGGAAGGccuggcGAAGCUGCGGCGCc--CGCCc -3' miRNA: 3'- -CUUUUU------UUUUGGUGUCGCGuacGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 46111 | 0.67 | 0.999937 |
Target: 5'- -----cGGGGCCu--GCGCggGCGCCu -3' miRNA: 3'- cuuuuuUUUUGGuguCGCGuaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 22047 | 0.67 | 0.999953 |
Target: 5'- ---cGGGGAGCCGUGGC-CcgGCGCCg -3' miRNA: 3'- cuuuUUUUUUGGUGUCGcGuaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 45116 | 0.67 | 0.999953 |
Target: 5'- ---cGAGuAGCgACGGC-CGUGUGCCa -3' miRNA: 3'- cuuuUUUuUUGgUGUCGcGUACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 103645 | 0.67 | 0.999953 |
Target: 5'- -------uGGCCACGGgcaCGCAgaagaGCGCCg -3' miRNA: 3'- cuuuuuuuUUGGUGUC---GCGUa----CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 47706 | 0.67 | 0.999937 |
Target: 5'- --------cACCGCcaGGCGCAcaUGCGCg -3' miRNA: 3'- cuuuuuuuuUGGUG--UCGCGU--ACGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 144525 | 0.67 | 0.999937 |
Target: 5'- ----uAAAAGCgGgGGCGCGgccGUGCCg -3' miRNA: 3'- cuuuuUUUUUGgUgUCGCGUa--CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 139557 | 0.67 | 0.999953 |
Target: 5'- --cGGGAGcGCCACgAGCGCgAUGaCGUCa -3' miRNA: 3'- cuuUUUUUuUGGUG-UCGCG-UAC-GCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 146682 | 0.67 | 0.999953 |
Target: 5'- -----cGAGACCGCAGgcUGCGgaaguccagGCGCCc -3' miRNA: 3'- cuuuuuUUUUGGUGUC--GCGUa--------CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 118244 | 0.68 | 0.999854 |
Target: 5'- cAAGAAcAGGCCGUGGCGUuuguGUGCGUCa -3' miRNA: 3'- cUUUUUuUUUGGUGUCGCG----UACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 63771 | 0.68 | 0.999854 |
Target: 5'- --------uGCCACGGCuccagguacacGCAcGCGCCg -3' miRNA: 3'- cuuuuuuuuUGGUGUCG-----------CGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 67473 | 0.68 | 0.999854 |
Target: 5'- -------cAACCACAGCGUGcugGcCGCCc -3' miRNA: 3'- cuuuuuuuUUGGUGUCGCGUa--C-GCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 14326 | 0.68 | 0.999854 |
Target: 5'- -----cAGGACUACGGCGCAca-GCCc -3' miRNA: 3'- cuuuuuUUUUGGUGUCGCGUacgCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 88864 | 0.68 | 0.99981 |
Target: 5'- uGGAAcuGGGCCGC-GCGCAUGcCGUa -3' miRNA: 3'- cUUUUuuUUUGGUGuCGCGUAC-GCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 24449 | 0.68 | 0.99981 |
Target: 5'- --------uACCGCGuGCGCAcGCGCUu -3' miRNA: 3'- cuuuuuuuuUGGUGU-CGCGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 95297 | 0.68 | 0.99981 |
Target: 5'- gGggGcgGGGGgCGCGGCGgAcGCGCCc -3' miRNA: 3'- -CuuUuuUUUUgGUGUCGCgUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 19541 | 0.68 | 0.99981 |
Target: 5'- aGAGcgGGAcGCCGCgcuuuuacacaaGGCGCAaaaGCGCCu -3' miRNA: 3'- -CUUuuUUUuUGGUG------------UCGCGUa--CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 111410 | 0.68 | 0.99981 |
Target: 5'- uGGAAcGAGGCCGCAGCcuucucCcgGUGCCu -3' miRNA: 3'- cUUUUuUUUUGGUGUCGc-----GuaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 2077 | 0.68 | 0.999854 |
Target: 5'- ------uGAGCCGcCGGuCGCcgGCGCUg -3' miRNA: 3'- cuuuuuuUUUGGU-GUC-GCGuaCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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