Results 81 - 100 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5792 | 3' | -45.3 | NC_001806.1 | + | 51098 | 0.69 | 0.999209 |
Target: 5'- aGAcGAGGGGGCCGCcgcccugcgGGCGCAcGUGUCg -3' miRNA: 3'- -CUuUUUUUUUGGUG---------UCGCGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 140125 | 0.69 | 0.999306 |
Target: 5'- aGAGGAGAcGCCA-GGCGCGgcacacgggguggGCGCCg -3' miRNA: 3'- cUUUUUUUuUGGUgUCGCGUa------------CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 75705 | 0.69 | 0.999365 |
Target: 5'- -------uAGCCACgAGCGC-UGgGCCg -3' miRNA: 3'- cuuuuuuuUUGGUG-UCGCGuACgCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 81819 | 0.69 | 0.999365 |
Target: 5'- ---uAAGAccCCGCAGgGCcUGUGCCa -3' miRNA: 3'- cuuuUUUUuuGGUGUCgCGuACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 95297 | 0.68 | 0.99981 |
Target: 5'- gGggGcgGGGGgCGCGGCGgAcGCGCCc -3' miRNA: 3'- -CuuUuuUUUUgGUGUCGCgUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 24449 | 0.68 | 0.99981 |
Target: 5'- --------uACCGCGuGCGCAcGCGCUu -3' miRNA: 3'- cuuuuuuuuUGGUGU-CGCGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 88864 | 0.68 | 0.99981 |
Target: 5'- uGGAAcuGGGCCGC-GCGCAUGcCGUa -3' miRNA: 3'- cUUUUuuUUUGGUGuCGCGUAC-GCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 14326 | 0.68 | 0.999854 |
Target: 5'- -----cAGGACUACGGCGCAca-GCCc -3' miRNA: 3'- cuuuuuUUUUGGUGUCGCGUacgCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 67473 | 0.68 | 0.999854 |
Target: 5'- -------cAACCACAGCGUGcugGcCGCCc -3' miRNA: 3'- cuuuuuuuUUGGUGUCGCGUa--C-GCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 63771 | 0.68 | 0.999854 |
Target: 5'- --------uGCCACGGCuccagguacacGCAcGCGCCg -3' miRNA: 3'- cuuuuuuuuUGGUGUCG-----------CGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 118244 | 0.68 | 0.999854 |
Target: 5'- cAAGAAcAGGCCGUGGCGUuuguGUGCGUCa -3' miRNA: 3'- cUUUUUuUUUGGUGUCGCG----UACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 19541 | 0.68 | 0.99981 |
Target: 5'- aGAGcgGGAcGCCGCgcuuuuacacaaGGCGCAaaaGCGCCu -3' miRNA: 3'- -CUUuuUUUuUGGUG------------UCGCGUa--CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 111410 | 0.68 | 0.99981 |
Target: 5'- uGGAAcGAGGCCGCAGCcuucucCcgGUGCCu -3' miRNA: 3'- cUUUUuUUUUGGUGUCGc-----GuaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 10728 | 0.68 | 0.99981 |
Target: 5'- -----cGGGACCGgAGCGCGcaUGCacGCCg -3' miRNA: 3'- cuuuuuUUUUGGUgUCGCGU--ACG--CGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 26974 | 0.68 | 0.999754 |
Target: 5'- --------cGCCGCGGCuCGUGgGCCc -3' miRNA: 3'- cuuuuuuuuUGGUGUCGcGUACgCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 115142 | 0.68 | 0.999754 |
Target: 5'- cAGGGAugGACCACGGC-CAgGaCGCCg -3' miRNA: 3'- cUUUUUuuUUGGUGUCGcGUaC-GCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 94764 | 0.68 | 0.999685 |
Target: 5'- -------cGACCGC-GCGCggGCGCUc -3' miRNA: 3'- cuuuuuuuUUGGUGuCGCGuaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 77474 | 0.68 | 0.999685 |
Target: 5'- cAAGAGGccGAcCCGCAGaUGC-UGCGCCg -3' miRNA: 3'- cUUUUUU--UUuGGUGUC-GCGuACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 70850 | 0.68 | 0.999685 |
Target: 5'- ------cAAGCCGCGGCGCGgcCGCg -3' miRNA: 3'- cuuuuuuUUUGGUGUCGCGUacGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 146856 | 0.68 | 0.999854 |
Target: 5'- ----cGGGGACCGCGGCccGCAgccggGuCGCCa -3' miRNA: 3'- cuuuuUUUUUGGUGUCG--CGUa----C-GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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