miRNA display CGI


Results 41 - 60 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5792 3' -45.3 NC_001806.1 + 1607 0.71 0.996901
Target:  5'- ------cGGGCCGCAGCGgc-GCGCCc -3'
miRNA:   3'- cuuuuuuUUUGGUGUCGCguaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 119026 0.71 0.996901
Target:  5'- --------cGCCgugGCGGCGC-UGCGCCu -3'
miRNA:   3'- cuuuuuuuuUGG---UGUCGCGuACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 15509 0.71 0.997262
Target:  5'- --cAAAAAcACCACAGaCGCGgaucggggucuuuuUGUGCCa -3'
miRNA:   3'- cuuUUUUUuUGGUGUC-GCGU--------------ACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 41195 0.71 0.997406
Target:  5'- aGGAGcuGAACCGCAGC-CAgagccccGCGCCu -3'
miRNA:   3'- cUUUUuuUUUGGUGUCGcGUa------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 119934 0.71 0.997406
Target:  5'- --------cGCCGCAgaacGCGuCGUGCGCCc -3'
miRNA:   3'- cuuuuuuuuUGGUGU----CGC-GUACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 113798 0.7 0.99784
Target:  5'- -----cGAGACC-CGGCGC-UGCuGCCa -3'
miRNA:   3'- cuuuuuUUUUGGuGUCGCGuACG-CGG- -5'
5792 3' -45.3 NC_001806.1 + 75673 0.7 0.99784
Target:  5'- aGAGAGAAGAUgGCGGCcCAgcGCGCCc -3'
miRNA:   3'- cUUUUUUUUUGgUGUCGcGUa-CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 1923 0.7 0.99784
Target:  5'- -----cGAGGCCagcaccguGCGGCGCAggucccGCGCCg -3'
miRNA:   3'- cuuuuuUUUUGG--------UGUCGCGUa-----CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 2660 0.7 0.998212
Target:  5'- -----cAGGGCgGCGGcCGCggGCGCCg -3'
miRNA:   3'- cuuuuuUUUUGgUGUC-GCGuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 29209 0.7 0.998212
Target:  5'- gGggGGAGcGACgAgGGCGacguGUGCGCCg -3'
miRNA:   3'- -CuuUUUUuUUGgUgUCGCg---UACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 43293 0.7 0.998212
Target:  5'- cGGAGGcgGAGCCGCGGCuGCAggagGC-CCu -3'
miRNA:   3'- -CUUUUuuUUUGGUGUCG-CGUa---CGcGG- -5'
5792 3' -45.3 NC_001806.1 + 121405 0.7 0.998212
Target:  5'- -----cGGAGCCG-GGCGCGugcUGCGCCu -3'
miRNA:   3'- cuuuuuUUUUGGUgUCGCGU---ACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 71967 0.7 0.998212
Target:  5'- ------uGGGCCGCcGCGCAUGUGUUc -3'
miRNA:   3'- cuuuuuuUUUGGUGuCGCGUACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 92477 0.7 0.998529
Target:  5'- -----cGAGGCCGCcaaGGCGCggGuCGCCa -3'
miRNA:   3'- cuuuuuUUUUGGUG---UCGCGuaC-GCGG- -5'
5792 3' -45.3 NC_001806.1 + 65228 0.7 0.998529
Target:  5'- ----cGAAuACCGCAGaGCG-GCGCCg -3'
miRNA:   3'- cuuuuUUUuUGGUGUCgCGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 26796 0.7 0.998529
Target:  5'- ---cGGAGcACCugGcGCGCcUGCGCCu -3'
miRNA:   3'- cuuuUUUUuUGGugU-CGCGuACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 8722 0.7 0.998721
Target:  5'- cGAGGAGAcAGGCgaucaccaugccgaCGCAGCGgGUGCGUCu -3'
miRNA:   3'- -CUUUUUU-UUUG--------------GUGUCGCgUACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 33373 0.7 0.998796
Target:  5'- ---cGGAGAGCCGCGGCaccCGgacGCGCCc -3'
miRNA:   3'- cuuuUUUUUUGGUGUCGc--GUa--CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 24565 0.7 0.998796
Target:  5'- --------cGCCAUGGCGCccggcGCGCCg -3'
miRNA:   3'- cuuuuuuuuUGGUGUCGCGua---CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 40569 0.7 0.998796
Target:  5'- uGAAAaugGAAGcGCCGCGGgucgGCGUGCGCg -3'
miRNA:   3'- -CUUU---UUUUuUGGUGUCg---CGUACGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.