miRNA display CGI


Results 61 - 80 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5792 3' -45.3 NC_001806.1 + 136357 0.69 0.999021
Target:  5'- ---cAAAAAACC-CGGgGCcgGCGCg -3'
miRNA:   3'- cuuuUUUUUUGGuGUCgCGuaCGCGg -5'
5792 3' -45.3 NC_001806.1 + 50541 0.69 0.999021
Target:  5'- --------cACCGCAGCGCGccggcUGCucGCCa -3'
miRNA:   3'- cuuuuuuuuUGGUGUCGCGU-----ACG--CGG- -5'
5792 3' -45.3 NC_001806.1 + 131193 0.69 0.999021
Target:  5'- -------cGACCACAGCGCc--UGCCg -3'
miRNA:   3'- cuuuuuuuUUGGUGUCGCGuacGCGG- -5'
5792 3' -45.3 NC_001806.1 + 44644 0.69 0.999021
Target:  5'- ---cGAGGGACCGCccucGGCGUc-GCGCCg -3'
miRNA:   3'- cuuuUUUUUUGGUG----UCGCGuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 80023 0.69 0.999209
Target:  5'- ------cGGGCCGCAGCG---GCGCCu -3'
miRNA:   3'- cuuuuuuUUUGGUGUCGCguaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 89527 0.69 0.999209
Target:  5'- ------cGAGCUGCuGCGCG-GCGCCc -3'
miRNA:   3'- cuuuuuuUUUGGUGuCGCGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 41424 0.69 0.999209
Target:  5'- --------uGCC-CAGCGCGccguggucggggUGCGCCg -3'
miRNA:   3'- cuuuuuuuuUGGuGUCGCGU------------ACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 51098 0.69 0.999209
Target:  5'- aGAcGAGGGGGCCGCcgcccugcgGGCGCAcGUGUCg -3'
miRNA:   3'- -CUuUUUUUUUGGUG---------UCGCGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 140125 0.69 0.999306
Target:  5'- aGAGGAGAcGCCA-GGCGCGgcacacgggguggGCGCCg -3'
miRNA:   3'- cUUUUUUUuUGGUgUCGCGUa------------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 35580 0.69 0.999365
Target:  5'- ------cGAACgACGuGCGCA-GCGCCg -3'
miRNA:   3'- cuuuuuuUUUGgUGU-CGCGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 119543 0.69 0.999365
Target:  5'- ------cAGGCCGuCAGCGgGgGCGCCa -3'
miRNA:   3'- cuuuuuuUUUGGU-GUCGCgUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 88054 0.69 0.999365
Target:  5'- -----cAGAACCACGG-GCGUGgGCa -3'
miRNA:   3'- cuuuuuUUUUGGUGUCgCGUACgCGg -5'
5792 3' -45.3 NC_001806.1 + 81819 0.69 0.999365
Target:  5'- ---uAAGAccCCGCAGgGCcUGUGCCa -3'
miRNA:   3'- cuuuUUUUuuGGUGUCgCGuACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 75705 0.69 0.999365
Target:  5'- -------uAGCCACgAGCGC-UGgGCCg -3'
miRNA:   3'- cuuuuuuuUUGGUG-UCGCGuACgCGG- -5'
5792 3' -45.3 NC_001806.1 + 113324 0.69 0.999482
Target:  5'- gGggGAGAuccAGGCCACcuGGCGCGUGgugaacggcaacuUGCCc -3'
miRNA:   3'- -CuuUUUU---UUUGGUG--UCGCGUAC-------------GCGG- -5'
5792 3' -45.3 NC_001806.1 + 24632 0.69 0.999494
Target:  5'- -----uGGGGCCugGGCGCGccgcUGCgGCCc -3'
miRNA:   3'- cuuuuuUUUUGGugUCGCGU----ACG-CGG- -5'
5792 3' -45.3 NC_001806.1 + 113137 0.69 0.999494
Target:  5'- ----uGAAcGCCugGGgGCA-GCGCCu -3'
miRNA:   3'- cuuuuUUUuUGGugUCgCGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 4183 0.69 0.999494
Target:  5'- gGggGcgGGGGCC-CGGCGCcgG-GCCa -3'
miRNA:   3'- -CuuUuuUUUUGGuGUCGCGuaCgCGG- -5'
5792 3' -45.3 NC_001806.1 + 56231 0.69 0.999494
Target:  5'- aGAAGAAGAGGCCccgaAGCGUcgcCGCCa -3'
miRNA:   3'- -CUUUUUUUUUGGug--UCGCGuacGCGG- -5'
5792 3' -45.3 NC_001806.1 + 67537 0.69 0.999494
Target:  5'- ---cGAGAGAUCGgggGGCGCAggacGCGCCg -3'
miRNA:   3'- cuuuUUUUUUGGUg--UCGCGUa---CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.