miRNA display CGI


Results 81 - 100 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5792 3' -45.3 NC_001806.1 + 20864 0.69 0.999494
Target:  5'- cAGAGAcAGACCGuCAGaCGCucgccGCGCCg -3'
miRNA:   3'- cUUUUUuUUUGGU-GUC-GCGua---CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 112696 0.69 0.999599
Target:  5'- ------cAGACgAC-GCGCGUGCGCg -3'
miRNA:   3'- cuuuuuuUUUGgUGuCGCGUACGCGg -5'
5792 3' -45.3 NC_001806.1 + 63694 0.69 0.999599
Target:  5'- uGAAGAuAuuGUCGCAGCGC-UGgGCCu -3'
miRNA:   3'- -CUUUUuUuuUGGUGUCGCGuACgCGG- -5'
5792 3' -45.3 NC_001806.1 + 100894 0.69 0.999599
Target:  5'- --------cGCgCACAGCGCGacgUGCGCg -3'
miRNA:   3'- cuuuuuuuuUG-GUGUCGCGU---ACGCGg -5'
5792 3' -45.3 NC_001806.1 + 135106 0.68 0.999685
Target:  5'- gGGGAGGGGGGCggggGCAGCGC-UGCGUg -3'
miRNA:   3'- -CUUUUUUUUUGg---UGUCGCGuACGCGg -5'
5792 3' -45.3 NC_001806.1 + 70850 0.68 0.999685
Target:  5'- ------cAAGCCGCGGCGCGgcCGCg -3'
miRNA:   3'- cuuuuuuUUUGGUGUCGCGUacGCGg -5'
5792 3' -45.3 NC_001806.1 + 77474 0.68 0.999685
Target:  5'- cAAGAGGccGAcCCGCAGaUGC-UGCGCCg -3'
miRNA:   3'- cUUUUUU--UUuGGUGUC-GCGuACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 94764 0.68 0.999685
Target:  5'- -------cGACCGC-GCGCggGCGCUc -3'
miRNA:   3'- cuuuuuuuUUGGUGuCGCGuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 26974 0.68 0.999754
Target:  5'- --------cGCCGCGGCuCGUGgGCCc -3'
miRNA:   3'- cuuuuuuuuUGGUGUCGcGUACgCGG- -5'
5792 3' -45.3 NC_001806.1 + 115142 0.68 0.999754
Target:  5'- cAGGGAugGACCACGGC-CAgGaCGCCg -3'
miRNA:   3'- cUUUUUuuUUGGUGUCGcGUaC-GCGG- -5'
5792 3' -45.3 NC_001806.1 + 88864 0.68 0.99981
Target:  5'- uGGAAcuGGGCCGC-GCGCAUGcCGUa -3'
miRNA:   3'- cUUUUuuUUUGGUGuCGCGUAC-GCGg -5'
5792 3' -45.3 NC_001806.1 + 24449 0.68 0.99981
Target:  5'- --------uACCGCGuGCGCAcGCGCUu -3'
miRNA:   3'- cuuuuuuuuUGGUGU-CGCGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 95297 0.68 0.99981
Target:  5'- gGggGcgGGGGgCGCGGCGgAcGCGCCc -3'
miRNA:   3'- -CuuUuuUUUUgGUGUCGCgUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 19541 0.68 0.99981
Target:  5'- aGAGcgGGAcGCCGCgcuuuuacacaaGGCGCAaaaGCGCCu -3'
miRNA:   3'- -CUUuuUUUuUGGUG------------UCGCGUa--CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 111410 0.68 0.99981
Target:  5'- uGGAAcGAGGCCGCAGCcuucucCcgGUGCCu -3'
miRNA:   3'- cUUUUuUUUUGGUGUCGc-----GuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 10728 0.68 0.99981
Target:  5'- -----cGGGACCGgAGCGCGcaUGCacGCCg -3'
miRNA:   3'- cuuuuuUUUUGGUgUCGCGU--ACG--CGG- -5'
5792 3' -45.3 NC_001806.1 + 67473 0.68 0.999854
Target:  5'- -------cAACCACAGCGUGcugGcCGCCc -3'
miRNA:   3'- cuuuuuuuUUGGUGUCGCGUa--C-GCGG- -5'
5792 3' -45.3 NC_001806.1 + 63771 0.68 0.999854
Target:  5'- --------uGCCACGGCuccagguacacGCAcGCGCCg -3'
miRNA:   3'- cuuuuuuuuUGGUGUCG-----------CGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 118244 0.68 0.999854
Target:  5'- cAAGAAcAGGCCGUGGCGUuuguGUGCGUCa -3'
miRNA:   3'- cUUUUUuUUUGGUGUCGCG----UACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 146856 0.68 0.999854
Target:  5'- ----cGGGGACCGCGGCccGCAgccggGuCGCCa -3'
miRNA:   3'- cuuuuUUUUUGGUGUCG--CGUa----C-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.