Results 101 - 120 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5792 | 3' | -45.3 | NC_001806.1 | + | 118244 | 0.68 | 0.999854 |
Target: 5'- cAAGAAcAGGCCGUGGCGUuuguGUGCGUCa -3' miRNA: 3'- cUUUUUuUUUGGUGUCGCG----UACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 63771 | 0.68 | 0.999854 |
Target: 5'- --------uGCCACGGCuccagguacacGCAcGCGCCg -3' miRNA: 3'- cuuuuuuuuUGGUGUCG-----------CGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 67473 | 0.68 | 0.999854 |
Target: 5'- -------cAACCACAGCGUGcugGcCGCCc -3' miRNA: 3'- cuuuuuuuUUGGUGUCGCGUa--C-GCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 14326 | 0.68 | 0.999854 |
Target: 5'- -----cAGGACUACGGCGCAca-GCCc -3' miRNA: 3'- cuuuuuUUUUGGUGUCGCGUacgCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 125860 | 0.67 | 0.999889 |
Target: 5'- --------cGCCGCGGaCGCcgugGCGCCc -3' miRNA: 3'- cuuuuuuuuUGGUGUC-GCGua--CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 116457 | 0.67 | 0.999889 |
Target: 5'- ----cGAGGGCCA-AGCGacggaCGUGCGCCu -3' miRNA: 3'- cuuuuUUUUUGGUgUCGC-----GUACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 68276 | 0.67 | 0.999889 |
Target: 5'- -------uGGCCACGGCcaaGCugcGCGCCg -3' miRNA: 3'- cuuuuuuuUUGGUGUCG---CGua-CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 63004 | 0.67 | 0.999889 |
Target: 5'- uGAAGGGAcgggccccgcGAACgCACAGCGCGuUGCuggucuucaucGCCg -3' miRNA: 3'- -CUUUUUU----------UUUG-GUGUCGCGU-ACG-----------CGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 3274 | 0.67 | 0.999889 |
Target: 5'- -------cAGCCACGcGCGCAggcgggGCGCg -3' miRNA: 3'- cuuuuuuuUUGGUGU-CGCGUa-----CGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 147483 | 0.67 | 0.999911 |
Target: 5'- cGGAGGGGAGCgggGCGGCGCcggagggggcgGCGCCg -3' miRNA: 3'- cUUUUUUUUUGg--UGUCGCGua---------CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 75558 | 0.67 | 0.999913 |
Target: 5'- cGAAGGGAcgGCCGgggaccacuccccCAGCGgGcGCGCCc -3' miRNA: 3'- -CUUUUUUuuUGGU-------------GUCGCgUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 107044 | 0.67 | 0.999916 |
Target: 5'- -----cGGGGCCGCGG-GC-UGUGCCg -3' miRNA: 3'- cuuuuuUUUUGGUGUCgCGuACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 21786 | 0.67 | 0.999916 |
Target: 5'- -------cGAgCGCGGCGCcgGCaGCCc -3' miRNA: 3'- cuuuuuuuUUgGUGUCGCGuaCG-CGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 126132 | 0.67 | 0.999916 |
Target: 5'- ---cGGAcGACgGCGGCgagGCcgGCGCCg -3' miRNA: 3'- cuuuUUUuUUGgUGUCG---CGuaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 42633 | 0.67 | 0.999916 |
Target: 5'- --------cGCCGCGGCGgCGUcGCGUCc -3' miRNA: 3'- cuuuuuuuuUGGUGUCGC-GUA-CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 99806 | 0.67 | 0.999916 |
Target: 5'- --------cACCugAGgGCGauagUGCGCCa -3' miRNA: 3'- cuuuuuuuuUGGugUCgCGU----ACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 77368 | 0.67 | 0.999916 |
Target: 5'- -----cAAGGCCACaggccagacgGGCGCggGCGCg -3' miRNA: 3'- cuuuuuUUUUGGUG----------UCGCGuaCGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 51389 | 0.67 | 0.999916 |
Target: 5'- --cGGAGGGGCUccuUAGCGCGgccguggGCGCCu -3' miRNA: 3'- cuuUUUUUUUGGu--GUCGCGUa------CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 28159 | 0.67 | 0.999925 |
Target: 5'- ----uGAGGGCCGCccccAGCGCGaggugaggggccggGCGCCa -3' miRNA: 3'- cuuuuUUUUUGGUG----UCGCGUa-------------CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 30452 | 0.67 | 0.999933 |
Target: 5'- ---------cCCGCGGCGCcgcccccuccgGCGCCg -3' miRNA: 3'- cuuuuuuuuuGGUGUCGCGua---------CGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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