miRNA display CGI


Results 121 - 140 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5792 3' -45.3 NC_001806.1 + 135765 0.67 0.999937
Target:  5'- cGGAAGGccuggcGAAGCUGCGGCGCc--CGCCc -3'
miRNA:   3'- -CUUUUU------UUUUGGUGUCGCGuacGCGG- -5'
5792 3' -45.3 NC_001806.1 + 46111 0.67 0.999937
Target:  5'- -----cGGGGCCu--GCGCggGCGCCu -3'
miRNA:   3'- cuuuuuUUUUGGuguCGCGuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 47706 0.67 0.999937
Target:  5'- --------cACCGCcaGGCGCAcaUGCGCg -3'
miRNA:   3'- cuuuuuuuuUGGUG--UCGCGU--ACGCGg -5'
5792 3' -45.3 NC_001806.1 + 144525 0.67 0.999937
Target:  5'- ----uAAAAGCgGgGGCGCGgccGUGCCg -3'
miRNA:   3'- cuuuuUUUUUGgUgUCGCGUa--CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 67350 0.67 0.999937
Target:  5'- cGggGAGccgaucAGGGCCGCccccccGCGCAUGgUGCCc -3'
miRNA:   3'- -CuuUUU------UUUUGGUGu-----CGCGUAC-GCGG- -5'
5792 3' -45.3 NC_001806.1 + 24719 0.67 0.999937
Target:  5'- --cGGAGGGACUuuuGCGCccGCGCCc -3'
miRNA:   3'- cuuUUUUUUUGGuguCGCGuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 24278 0.67 0.999937
Target:  5'- ---------cCCGCcGUGCAgUGCGCCg -3'
miRNA:   3'- cuuuuuuuuuGGUGuCGCGU-ACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 122282 0.67 0.999937
Target:  5'- cGAAAGGAGGCCagcgACAGCGCGaugagGgGCa -3'
miRNA:   3'- cUUUUUUUUUGG----UGUCGCGUa----CgCGg -5'
5792 3' -45.3 NC_001806.1 + 30504 0.67 0.999937
Target:  5'- cGAGcAGGAGGCgGCGGUGCGUccgaggaagagGCGCg -3'
miRNA:   3'- -CUUuUUUUUUGgUGUCGCGUA-----------CGCGg -5'
5792 3' -45.3 NC_001806.1 + 24595 0.67 0.999937
Target:  5'- cGAGGAGGAGGCCcacucGCAcGcCGCcUGCGCg -3'
miRNA:   3'- -CUUUUUUUUUGG-----UGU-C-GCGuACGCGg -5'
5792 3' -45.3 NC_001806.1 + 56302 0.67 0.999937
Target:  5'- -----cGGAGCCcCAGCaCcUGCGCCa -3'
miRNA:   3'- cuuuuuUUUUGGuGUCGcGuACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 49252 0.67 0.999953
Target:  5'- gGAGGAGAuggcGGGCgACgAGcCGCccGUGCGCCg -3'
miRNA:   3'- -CUUUUUU----UUUGgUG-UC-GCG--UACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 62641 0.67 0.999953
Target:  5'- --------cACgGgAGCGCcUGCGCCa -3'
miRNA:   3'- cuuuuuuuuUGgUgUCGCGuACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 146682 0.67 0.999953
Target:  5'- -----cGAGACCGCAGgcUGCGgaaguccagGCGCCc -3'
miRNA:   3'- cuuuuuUUUUGGUGUC--GCGUa--------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 103645 0.67 0.999953
Target:  5'- -------uGGCCACGGgcaCGCAgaagaGCGCCg -3'
miRNA:   3'- cuuuuuuuUUGGUGUC---GCGUa----CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 45116 0.67 0.999953
Target:  5'- ---cGAGuAGCgACGGC-CGUGUGCCa -3'
miRNA:   3'- cuuuUUUuUUGgUGUCGcGUACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 22047 0.67 0.999953
Target:  5'- ---cGGGGAGCCGUGGC-CcgGCGCCg -3'
miRNA:   3'- cuuuUUUUUUGGUGUCGcGuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 139557 0.67 0.999953
Target:  5'- --cGGGAGcGCCACgAGCGCgAUGaCGUCa -3'
miRNA:   3'- cuuUUUUUuUGGUG-UCGCG-UAC-GCGG- -5'
5792 3' -45.3 NC_001806.1 + 3006 0.67 0.999962
Target:  5'- -------cGGCCGcCAGCGCgucggcggcguccgGUGCGCUg -3'
miRNA:   3'- cuuuuuuuUUGGU-GUCGCG--------------UACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 24087 0.67 0.999966
Target:  5'- ------uGGGCgCACAGgGCGUGCuGCUg -3'
miRNA:   3'- cuuuuuuUUUG-GUGUCgCGUACG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.