miRNA display CGI


Results 141 - 160 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5792 3' -45.3 NC_001806.1 + 141387 0.67 0.999966
Target:  5'- ---------uUCugGGCGUGUGUGCCc -3'
miRNA:   3'- cuuuuuuuuuGGugUCGCGUACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 151388 0.67 0.999966
Target:  5'- cGGGAAcguGGAGCCACuGGCGCA-GCaGCa -3'
miRNA:   3'- -CUUUUu--UUUUGGUG-UCGCGUaCG-CGg -5'
5792 3' -45.3 NC_001806.1 + 10111 0.67 0.999966
Target:  5'- ---------cUCGCGGCGCAcgGCGCg -3'
miRNA:   3'- cuuuuuuuuuGGUGUCGCGUa-CGCGg -5'
5792 3' -45.3 NC_001806.1 + 129334 0.67 0.999966
Target:  5'- ---uGGAAAGCCuuCAuCGCGUGgGCCc -3'
miRNA:   3'- cuuuUUUUUUGGu-GUcGCGUACgCGG- -5'
5792 3' -45.3 NC_001806.1 + 27283 0.67 0.999966
Target:  5'- -------cGGCCGcCAGCGCGgcgGgGCCc -3'
miRNA:   3'- cuuuuuuuUUGGU-GUCGCGUa--CgCGG- -5'
5792 3' -45.3 NC_001806.1 + 19486 0.67 0.999966
Target:  5'- uGAGAGGGGGCgggaAgGGCGCuUGCGCUu -3'
miRNA:   3'- cUUUUUUUUUGg---UgUCGCGuACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 4836 0.67 0.999966
Target:  5'- -----cGAGGCCGCGGgGUcggGCGUCg -3'
miRNA:   3'- cuuuuuUUUUGGUGUCgCGua-CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 2524 0.67 0.999966
Target:  5'- cGGGGGcgGGCC-CGGCGCAccGCGCg -3'
miRNA:   3'- cUUUUUuuUUGGuGUCGCGUa-CGCGg -5'
5792 3' -45.3 NC_001806.1 + 128220 0.67 0.999966
Target:  5'- --cAGGGAuACCGCGGCGUcgGcCGUg -3'
miRNA:   3'- cuuUUUUUuUGGUGUCGCGuaC-GCGg -5'
5792 3' -45.3 NC_001806.1 + 24849 0.67 0.999966
Target:  5'- ------cGGGCCGCAGCGgCAccGUGCUg -3'
miRNA:   3'- cuuuuuuUUUGGUGUCGC-GUa-CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 24087 0.67 0.999966
Target:  5'- ------uGGGCgCACAGgGCGUGCuGCUg -3'
miRNA:   3'- cuuuuuuUUUG-GUGUCgCGUACG-CGG- -5'
5792 3' -45.3 NC_001806.1 + 13254 0.67 0.999966
Target:  5'- ------cGAGCCGCAG-GUAcGUGCCg -3'
miRNA:   3'- cuuuuuuUUUGGUGUCgCGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 2860 0.67 0.99997
Target:  5'- cGggGAGGggggcgcgggcguccGAGCCgGgGGCGUccGCGCCg -3'
miRNA:   3'- -CuuUUUU---------------UUUGG-UgUCGCGuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 76297 0.66 0.999972
Target:  5'- cGGAGGAGAuauCCGCGGUGCGcaacgacccggcgGCgGCCg -3'
miRNA:   3'- -CUUUUUUUuu-GGUGUCGCGUa------------CG-CGG- -5'
5792 3' -45.3 NC_001806.1 + 8625 0.66 0.999975
Target:  5'- gGGAAGAGAGACgACAagaaggacGCGCGUGUcgauGCg -3'
miRNA:   3'- -CUUUUUUUUUGgUGU--------CGCGUACG----CGg -5'
5792 3' -45.3 NC_001806.1 + 29451 0.66 0.999975
Target:  5'- --cGAGGAGGCCGuCAGgGCggGCacgGCCg -3'
miRNA:   3'- cuuUUUUUUUGGU-GUCgCGuaCG---CGG- -5'
5792 3' -45.3 NC_001806.1 + 83484 0.66 0.999975
Target:  5'- ----cAAAuGCCugGGgGCGccccacUGCGCCg -3'
miRNA:   3'- cuuuuUUUuUGGugUCgCGU------ACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 85016 0.66 0.999975
Target:  5'- cGAGGAGAucGCCAUcguGCGCucgcucucgGUGCCc -3'
miRNA:   3'- -CUUUUUUuuUGGUGu--CGCGua-------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 118862 0.66 0.999975
Target:  5'- ------uGGugCACGGCGUuUGcCGCCu -3'
miRNA:   3'- cuuuuuuUUugGUGUCGCGuAC-GCGG- -5'
5792 3' -45.3 NC_001806.1 + 145728 0.66 0.999975
Target:  5'- -------uGGCCGC-GCGgGUGCGCg -3'
miRNA:   3'- cuuuuuuuUUGGUGuCGCgUACGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.