Results 61 - 80 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5792 | 3' | -45.3 | NC_001806.1 | + | 103645 | 0.67 | 0.999953 |
Target: 5'- -------uGGCCACGGgcaCGCAgaagaGCGCCg -3' miRNA: 3'- cuuuuuuuUUGGUGUC---GCGUa----CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 49252 | 0.67 | 0.999953 |
Target: 5'- gGAGGAGAuggcGGGCgACgAGcCGCccGUGCGCCg -3' miRNA: 3'- -CUUUUUU----UUUGgUG-UC-GCG--UACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 62641 | 0.67 | 0.999953 |
Target: 5'- --------cACgGgAGCGCcUGCGCCa -3' miRNA: 3'- cuuuuuuuuUGgUgUCGCGuACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 56302 | 0.67 | 0.999937 |
Target: 5'- -----cGGAGCCcCAGCaCcUGCGCCa -3' miRNA: 3'- cuuuuuUUUUGGuGUCGcGuACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 30504 | 0.67 | 0.999937 |
Target: 5'- cGAGcAGGAGGCgGCGGUGCGUccgaggaagagGCGCg -3' miRNA: 3'- -CUUuUUUUUUGgUGUCGCGUA-----------CGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 122282 | 0.67 | 0.999937 |
Target: 5'- cGAAAGGAGGCCagcgACAGCGCGaugagGgGCa -3' miRNA: 3'- cUUUUUUUUUGG----UGUCGCGUa----CgCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 24278 | 0.67 | 0.999937 |
Target: 5'- ---------cCCGCcGUGCAgUGCGCCg -3' miRNA: 3'- cuuuuuuuuuGGUGuCGCGU-ACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 24719 | 0.67 | 0.999937 |
Target: 5'- --cGGAGGGACUuuuGCGCccGCGCCc -3' miRNA: 3'- cuuUUUUUUUGGuguCGCGuaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 67350 | 0.67 | 0.999937 |
Target: 5'- cGggGAGccgaucAGGGCCGCccccccGCGCAUGgUGCCc -3' miRNA: 3'- -CuuUUU------UUUUGGUGu-----CGCGUAC-GCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 135765 | 0.67 | 0.999937 |
Target: 5'- cGGAAGGccuggcGAAGCUGCGGCGCc--CGCCc -3' miRNA: 3'- -CUUUUU------UUUUGGUGUCGCGuacGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 46111 | 0.67 | 0.999937 |
Target: 5'- -----cGGGGCCu--GCGCggGCGCCu -3' miRNA: 3'- cuuuuuUUUUGGuguCGCGuaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 47706 | 0.67 | 0.999937 |
Target: 5'- --------cACCGCcaGGCGCAcaUGCGCg -3' miRNA: 3'- cuuuuuuuuUGGUG--UCGCGU--ACGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 144525 | 0.67 | 0.999937 |
Target: 5'- ----uAAAAGCgGgGGCGCGgccGUGCCg -3' miRNA: 3'- cuuuuUUUUUGgUgUCGCGUa--CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 24595 | 0.67 | 0.999937 |
Target: 5'- cGAGGAGGAGGCCcacucGCAcGcCGCcUGCGCg -3' miRNA: 3'- -CUUUUUUUUUGG-----UGU-C-GCGuACGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 30452 | 0.67 | 0.999933 |
Target: 5'- ---------cCCGCGGCGCcgcccccuccgGCGCCg -3' miRNA: 3'- cuuuuuuuuuGGUGUCGCGua---------CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 28159 | 0.67 | 0.999925 |
Target: 5'- ----uGAGGGCCGCccccAGCGCGaggugaggggccggGCGCCa -3' miRNA: 3'- cuuuuUUUUUGGUG----UCGCGUa-------------CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 21786 | 0.67 | 0.999916 |
Target: 5'- -------cGAgCGCGGCGCcgGCaGCCc -3' miRNA: 3'- cuuuuuuuUUgGUGUCGCGuaCG-CGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 126132 | 0.67 | 0.999916 |
Target: 5'- ---cGGAcGACgGCGGCgagGCcgGCGCCg -3' miRNA: 3'- cuuuUUUuUUGgUGUCG---CGuaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 42633 | 0.67 | 0.999916 |
Target: 5'- --------cGCCGCGGCGgCGUcGCGUCc -3' miRNA: 3'- cuuuuuuuuUGGUGUCGC-GUA-CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 99806 | 0.67 | 0.999916 |
Target: 5'- --------cACCugAGgGCGauagUGCGCCa -3' miRNA: 3'- cuuuuuuuuUGGugUCgCGU----ACGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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