miRNA display CGI


Results 81 - 100 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5792 3' -45.3 NC_001806.1 + 77368 0.67 0.999916
Target:  5'- -----cAAGGCCACaggccagacgGGCGCggGCGCg -3'
miRNA:   3'- cuuuuuUUUUGGUG----------UCGCGuaCGCGg -5'
5792 3' -45.3 NC_001806.1 + 21786 0.67 0.999916
Target:  5'- -------cGAgCGCGGCGCcgGCaGCCc -3'
miRNA:   3'- cuuuuuuuUUgGUGUCGCGuaCG-CGG- -5'
5792 3' -45.3 NC_001806.1 + 107044 0.67 0.999916
Target:  5'- -----cGGGGCCGCGG-GC-UGUGCCg -3'
miRNA:   3'- cuuuuuUUUUGGUGUCgCGuACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 75558 0.67 0.999913
Target:  5'- cGAAGGGAcgGCCGgggaccacuccccCAGCGgGcGCGCCc -3'
miRNA:   3'- -CUUUUUUuuUGGU-------------GUCGCgUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 147483 0.67 0.999911
Target:  5'- cGGAGGGGAGCgggGCGGCGCcggagggggcgGCGCCg -3'
miRNA:   3'- cUUUUUUUUUGg--UGUCGCGua---------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 3274 0.67 0.999889
Target:  5'- -------cAGCCACGcGCGCAggcgggGCGCg -3'
miRNA:   3'- cuuuuuuuUUGGUGU-CGCGUa-----CGCGg -5'
5792 3' -45.3 NC_001806.1 + 63004 0.67 0.999889
Target:  5'- uGAAGGGAcgggccccgcGAACgCACAGCGCGuUGCuggucuucaucGCCg -3'
miRNA:   3'- -CUUUUUU----------UUUG-GUGUCGCGU-ACG-----------CGG- -5'
5792 3' -45.3 NC_001806.1 + 68276 0.67 0.999889
Target:  5'- -------uGGCCACGGCcaaGCugcGCGCCg -3'
miRNA:   3'- cuuuuuuuUUGGUGUCG---CGua-CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 116457 0.67 0.999889
Target:  5'- ----cGAGGGCCA-AGCGacggaCGUGCGCCu -3'
miRNA:   3'- cuuuuUUUUUGGUgUCGC-----GUACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 125860 0.67 0.999889
Target:  5'- --------cGCCGCGGaCGCcgugGCGCCc -3'
miRNA:   3'- cuuuuuuuuUGGUGUC-GCGua--CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 63771 0.68 0.999854
Target:  5'- --------uGCCACGGCuccagguacacGCAcGCGCCg -3'
miRNA:   3'- cuuuuuuuuUGGUGUCG-----------CGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 67473 0.68 0.999854
Target:  5'- -------cAACCACAGCGUGcugGcCGCCc -3'
miRNA:   3'- cuuuuuuuUUGGUGUCGCGUa--C-GCGG- -5'
5792 3' -45.3 NC_001806.1 + 118244 0.68 0.999854
Target:  5'- cAAGAAcAGGCCGUGGCGUuuguGUGCGUCa -3'
miRNA:   3'- cUUUUUuUUUGGUGUCGCG----UACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 14326 0.68 0.999854
Target:  5'- -----cAGGACUACGGCGCAca-GCCc -3'
miRNA:   3'- cuuuuuUUUUGGUGUCGCGUacgCGG- -5'
5792 3' -45.3 NC_001806.1 + 146856 0.68 0.999854
Target:  5'- ----cGGGGACCGCGGCccGCAgccggGuCGCCa -3'
miRNA:   3'- cuuuuUUUUUGGUGUCG--CGUa----C-GCGG- -5'
5792 3' -45.3 NC_001806.1 + 2077 0.68 0.999854
Target:  5'- ------uGAGCCGcCGGuCGCcgGCGCUg -3'
miRNA:   3'- cuuuuuuUUUGGU-GUC-GCGuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 59348 0.68 0.999854
Target:  5'- gGGAAGGuuGGCCcgcacCGGCGCAUGCaggguGCUg -3'
miRNA:   3'- -CUUUUUuuUUGGu----GUCGCGUACG-----CGG- -5'
5792 3' -45.3 NC_001806.1 + 147732 0.68 0.999854
Target:  5'- -----cGGGGCCACGgccGCGCGgggGCGCg -3'
miRNA:   3'- cuuuuuUUUUGGUGU---CGCGUa--CGCGg -5'
5792 3' -45.3 NC_001806.1 + 88864 0.68 0.99981
Target:  5'- uGGAAcuGGGCCGC-GCGCAUGcCGUa -3'
miRNA:   3'- cUUUUuuUUUGGUGuCGCGUAC-GCGg -5'
5792 3' -45.3 NC_001806.1 + 95297 0.68 0.99981
Target:  5'- gGggGcgGGGGgCGCGGCGgAcGCGCCc -3'
miRNA:   3'- -CuuUuuUUUUgGUGUCGCgUaCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.