Results 101 - 120 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5792 | 3' | -45.3 | NC_001806.1 | + | 24449 | 0.68 | 0.99981 |
Target: 5'- --------uACCGCGuGCGCAcGCGCUu -3' miRNA: 3'- cuuuuuuuuUGGUGU-CGCGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 95297 | 0.68 | 0.99981 |
Target: 5'- gGggGcgGGGGgCGCGGCGgAcGCGCCc -3' miRNA: 3'- -CuuUuuUUUUgGUGUCGCgUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 19541 | 0.68 | 0.99981 |
Target: 5'- aGAGcgGGAcGCCGCgcuuuuacacaaGGCGCAaaaGCGCCu -3' miRNA: 3'- -CUUuuUUUuUGGUG------------UCGCGUa--CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 111410 | 0.68 | 0.99981 |
Target: 5'- uGGAAcGAGGCCGCAGCcuucucCcgGUGCCu -3' miRNA: 3'- cUUUUuUUUUGGUGUCGc-----GuaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 26974 | 0.68 | 0.999754 |
Target: 5'- --------cGCCGCGGCuCGUGgGCCc -3' miRNA: 3'- cuuuuuuuuUGGUGUCGcGUACgCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 115142 | 0.68 | 0.999754 |
Target: 5'- cAGGGAugGACCACGGC-CAgGaCGCCg -3' miRNA: 3'- cUUUUUuuUUGGUGUCGcGUaC-GCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 70850 | 0.68 | 0.999685 |
Target: 5'- ------cAAGCCGCGGCGCGgcCGCg -3' miRNA: 3'- cuuuuuuUUUGGUGUCGCGUacGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 77474 | 0.68 | 0.999685 |
Target: 5'- cAAGAGGccGAcCCGCAGaUGC-UGCGCCg -3' miRNA: 3'- cUUUUUU--UUuGGUGUC-GCGuACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 94764 | 0.68 | 0.999685 |
Target: 5'- -------cGACCGC-GCGCggGCGCUc -3' miRNA: 3'- cuuuuuuuUUGGUGuCGCGuaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 135106 | 0.68 | 0.999685 |
Target: 5'- gGGGAGGGGGGCggggGCAGCGC-UGCGUg -3' miRNA: 3'- -CUUUUUUUUUGg---UGUCGCGuACGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 63694 | 0.69 | 0.999599 |
Target: 5'- uGAAGAuAuuGUCGCAGCGC-UGgGCCu -3' miRNA: 3'- -CUUUUuUuuUGGUGUCGCGuACgCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 112696 | 0.69 | 0.999599 |
Target: 5'- ------cAGACgAC-GCGCGUGCGCg -3' miRNA: 3'- cuuuuuuUUUGgUGuCGCGUACGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 100894 | 0.69 | 0.999599 |
Target: 5'- --------cGCgCACAGCGCGacgUGCGCg -3' miRNA: 3'- cuuuuuuuuUG-GUGUCGCGU---ACGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 20864 | 0.69 | 0.999494 |
Target: 5'- cAGAGAcAGACCGuCAGaCGCucgccGCGCCg -3' miRNA: 3'- cUUUUUuUUUGGU-GUC-GCGua---CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 24632 | 0.69 | 0.999494 |
Target: 5'- -----uGGGGCCugGGCGCGccgcUGCgGCCc -3' miRNA: 3'- cuuuuuUUUUGGugUCGCGU----ACG-CGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 113137 | 0.69 | 0.999494 |
Target: 5'- ----uGAAcGCCugGGgGCA-GCGCCu -3' miRNA: 3'- cuuuuUUUuUGGugUCgCGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 4183 | 0.69 | 0.999494 |
Target: 5'- gGggGcgGGGGCC-CGGCGCcgG-GCCa -3' miRNA: 3'- -CuuUuuUUUUGGuGUCGCGuaCgCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 67537 | 0.69 | 0.999494 |
Target: 5'- ---cGAGAGAUCGgggGGCGCAggacGCGCCg -3' miRNA: 3'- cuuuUUUUUUGGUg--UCGCGUa---CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 56231 | 0.69 | 0.999494 |
Target: 5'- aGAAGAAGAGGCCccgaAGCGUcgcCGCCa -3' miRNA: 3'- -CUUUUUUUUUGGug--UCGCGuacGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 113324 | 0.69 | 0.999482 |
Target: 5'- gGggGAGAuccAGGCCACcuGGCGCGUGgugaacggcaacuUGCCc -3' miRNA: 3'- -CuuUUUU---UUUGGUG--UCGCGUAC-------------GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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