miRNA display CGI


Results 41 - 60 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5792 3' -45.3 NC_001806.1 + 24719 0.67 0.999937
Target:  5'- --cGGAGGGACUuuuGCGCccGCGCCc -3'
miRNA:   3'- cuuUUUUUUUGGuguCGCGuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 24849 0.67 0.999966
Target:  5'- ------cGGGCCGCAGCGgCAccGUGCUg -3'
miRNA:   3'- cuuuuuuUUUGGUGUCGC-GUa-CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 24963 0.66 0.999986
Target:  5'- -cGAAGAcGACgGCGGCGCGUucgagggggacgggGUGCUg -3'
miRNA:   3'- cuUUUUUuUUGgUGUCGCGUA--------------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 26796 0.7 0.998529
Target:  5'- ---cGGAGcACCugGcGCGCcUGCGCCu -3'
miRNA:   3'- cuuuUUUUuUGGugU-CGCGuACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 26974 0.68 0.999754
Target:  5'- --------cGCCGCGGCuCGUGgGCCc -3'
miRNA:   3'- cuuuuuuuuUGGUGUCGcGUACgCGG- -5'
5792 3' -45.3 NC_001806.1 + 27283 0.67 0.999966
Target:  5'- -------cGGCCGcCAGCGCGgcgGgGCCc -3'
miRNA:   3'- cuuuuuuuUUGGU-GUCGCGUa--CgCGG- -5'
5792 3' -45.3 NC_001806.1 + 28159 0.67 0.999925
Target:  5'- ----uGAGGGCCGCccccAGCGCGaggugaggggccggGCGCCa -3'
miRNA:   3'- cuuuuUUUUUGGUG----UCGCGUa-------------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 29163 0.73 0.985959
Target:  5'- -cGAGGAAGACCccgGCAGuUGCGgggGCGCCc -3'
miRNA:   3'- cuUUUUUUUUGG---UGUC-GCGUa--CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 29209 0.7 0.998212
Target:  5'- gGggGGAGcGACgAgGGCGacguGUGCGCCg -3'
miRNA:   3'- -CuuUUUUuUUGgUgUCGCg---UACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 29451 0.66 0.999975
Target:  5'- --cGAGGAGGCCGuCAGgGCggGCacgGCCg -3'
miRNA:   3'- cuuUUUUUUUGGU-GUCgCGuaCG---CGG- -5'
5792 3' -45.3 NC_001806.1 + 29959 0.71 0.995646
Target:  5'- ------cGAGCCGCGGCGCcgcgggggGCGUCu -3'
miRNA:   3'- cuuuuuuUUUGGUGUCGCGua------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 30452 0.67 0.999933
Target:  5'- ---------cCCGCGGCGCcgcccccuccgGCGCCg -3'
miRNA:   3'- cuuuuuuuuuGGUGUCGCGua---------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 30504 0.67 0.999937
Target:  5'- cGAGcAGGAGGCgGCGGUGCGUccgaggaagagGCGCg -3'
miRNA:   3'- -CUUuUUUUUUGgUGUCGCGUA-----------CGCGg -5'
5792 3' -45.3 NC_001806.1 + 31766 0.66 0.999994
Target:  5'- -----cAGAGCCGCGGCcCggGCuGCCu -3'
miRNA:   3'- cuuuuuUUUUGGUGUCGcGuaCG-CGG- -5'
5792 3' -45.3 NC_001806.1 + 32919 0.99 0.109189
Target:  5'- gGAAAAAAAAACCACA-CGCAUGCGCCg -3'
miRNA:   3'- -CUUUUUUUUUGGUGUcGCGUACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 33290 0.72 0.990646
Target:  5'- cGAAAAAAcAGACCAgCGGCcgGCcgGCGCUu -3'
miRNA:   3'- -CUUUUUU-UUUGGU-GUCG--CGuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 33373 0.7 0.998796
Target:  5'- ---cGGAGAGCCGCGGCaccCGgacGCGCCc -3'
miRNA:   3'- cuuuUUUUUUGGUGUCGc--GUa--CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 33723 0.66 0.999994
Target:  5'- --------uGCCGCuugugAGUGCGcGCGCCg -3'
miRNA:   3'- cuuuuuuuuUGGUG-----UCGCGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 35551 0.74 0.974415
Target:  5'- ------cGAGCCGCucGGCGCGcccgGCGCCg -3'
miRNA:   3'- cuuuuuuUUUGGUG--UCGCGUa---CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 35580 0.69 0.999365
Target:  5'- ------cGAACgACGuGCGCA-GCGCCg -3'
miRNA:   3'- cuuuuuuUUUGgUGU-CGCGUaCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.