miRNA display CGI


Results 61 - 80 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5792 3' -45.3 NC_001806.1 + 37296 0.81 0.761185
Target:  5'- uGGAGAAAGGGCCGCAgGCGCGUG-GCg -3'
miRNA:   3'- -CUUUUUUUUUGGUGU-CGCGUACgCGg -5'
5792 3' -45.3 NC_001806.1 + 37918 0.66 0.999982
Target:  5'- --------cGCCAUgggGGCGCcgGgGCCg -3'
miRNA:   3'- cuuuuuuuuUGGUG---UCGCGuaCgCGG- -5'
5792 3' -45.3 NC_001806.1 + 40569 0.7 0.998796
Target:  5'- uGAAAaugGAAGcGCCGCGGgucgGCGUGCGCg -3'
miRNA:   3'- -CUUU---UUUUuUGGUGUCg---CGUACGCGg -5'
5792 3' -45.3 NC_001806.1 + 41195 0.71 0.997406
Target:  5'- aGGAGcuGAACCGCAGC-CAgagccccGCGCCu -3'
miRNA:   3'- cUUUUuuUUUGGUGUCGcGUa------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 41424 0.69 0.999209
Target:  5'- --------uGCC-CAGCGCGccguggucggggUGCGCCg -3'
miRNA:   3'- cuuuuuuuuUGGuGUCGCGU------------ACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 42633 0.67 0.999916
Target:  5'- --------cGCCGCGGCGgCGUcGCGUCc -3'
miRNA:   3'- cuuuuuuuuUGGUGUCGC-GUA-CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 43293 0.7 0.998212
Target:  5'- cGGAGGcgGAGCCGCGGCuGCAggagGC-CCu -3'
miRNA:   3'- -CUUUUuuUUUGGUGUCG-CGUa---CGcGG- -5'
5792 3' -45.3 NC_001806.1 + 44644 0.69 0.999021
Target:  5'- ---cGAGGGACCGCccucGGCGUc-GCGCCg -3'
miRNA:   3'- cuuuUUUUUUGGUG----UCGCGuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 45116 0.67 0.999953
Target:  5'- ---cGAGuAGCgACGGC-CGUGUGCCa -3'
miRNA:   3'- cuuuUUUuUUGgUGUCGcGUACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 46111 0.67 0.999937
Target:  5'- -----cGGGGCCu--GCGCggGCGCCu -3'
miRNA:   3'- cuuuuuUUUUGGuguCGCGuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 47706 0.67 0.999937
Target:  5'- --------cACCGCcaGGCGCAcaUGCGCg -3'
miRNA:   3'- cuuuuuuuuUGGUG--UCGCGU--ACGCGg -5'
5792 3' -45.3 NC_001806.1 + 49252 0.67 0.999953
Target:  5'- gGAGGAGAuggcGGGCgACgAGcCGCccGUGCGCCg -3'
miRNA:   3'- -CUUUUUU----UUUGgUG-UC-GCG--UACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 50332 0.66 0.999991
Target:  5'- ---cGGGAGGCCGCcuuccuggGGCGCGUGCuggauguGCUg -3'
miRNA:   3'- cuuuUUUUUUGGUG--------UCGCGUACG-------CGG- -5'
5792 3' -45.3 NC_001806.1 + 50541 0.69 0.999021
Target:  5'- --------cACCGCAGCGCGccggcUGCucGCCa -3'
miRNA:   3'- cuuuuuuuuUGGUGUCGCGU-----ACG--CGG- -5'
5792 3' -45.3 NC_001806.1 + 50905 0.66 0.999994
Target:  5'- -------cGGCCGCGGaGCAcguggaucUGCGCCc -3'
miRNA:   3'- cuuuuuuuUUGGUGUCgCGU--------ACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 51098 0.69 0.999209
Target:  5'- aGAcGAGGGGGCCGCcgcccugcgGGCGCAcGUGUCg -3'
miRNA:   3'- -CUuUUUUUUUGGUG---------UCGCGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 51389 0.67 0.999916
Target:  5'- --cGGAGGGGCUccuUAGCGCGgccguggGCGCCu -3'
miRNA:   3'- cuuUUUUUUUGGu--GUCGCGUa------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 53626 0.75 0.964811
Target:  5'- aGAGGAGAcgagacAGACCGCAGUaCAcGCGCCu -3'
miRNA:   3'- -CUUUUUU------UUUGGUGUCGcGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 56231 0.69 0.999494
Target:  5'- aGAAGAAGAGGCCccgaAGCGUcgcCGCCa -3'
miRNA:   3'- -CUUUUUUUUUGGug--UCGCGuacGCGG- -5'
5792 3' -45.3 NC_001806.1 + 56302 0.67 0.999937
Target:  5'- -----cGGAGCCcCAGCaCcUGCGCCa -3'
miRNA:   3'- cuuuuuUUUUGGuGUCGcGuACGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.