Results 81 - 100 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5792 | 3' | -45.3 | NC_001806.1 | + | 56498 | 0.71 | 0.995646 |
Target: 5'- cGAGAAAcaccuGGGGCCACAGCgGCAgGC-CCg -3' miRNA: 3'- -CUUUUU-----UUUUGGUGUCG-CGUaCGcGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 56881 | 0.66 | 0.999994 |
Target: 5'- --------cACCAgAGCGCGcGCuGCCu -3' miRNA: 3'- cuuuuuuuuUGGUgUCGCGUaCG-CGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 59348 | 0.68 | 0.999854 |
Target: 5'- gGGAAGGuuGGCCcgcacCGGCGCAUGCaggguGCUg -3' miRNA: 3'- -CUUUUUuuUUGGu----GUCGCGUACG-----CGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 62641 | 0.67 | 0.999953 |
Target: 5'- --------cACgGgAGCGCcUGCGCCa -3' miRNA: 3'- cuuuuuuuuUGgUgUCGCGuACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 63004 | 0.67 | 0.999889 |
Target: 5'- uGAAGGGAcgggccccgcGAACgCACAGCGCGuUGCuggucuucaucGCCg -3' miRNA: 3'- -CUUUUUU----------UUUG-GUGUCGCGU-ACG-----------CGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 63694 | 0.69 | 0.999599 |
Target: 5'- uGAAGAuAuuGUCGCAGCGC-UGgGCCu -3' miRNA: 3'- -CUUUUuUuuUGGUGUCGCGuACgCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 63771 | 0.68 | 0.999854 |
Target: 5'- --------uGCCACGGCuccagguacacGCAcGCGCCg -3' miRNA: 3'- cuuuuuuuuUGGUGUCG-----------CGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 64944 | 0.81 | 0.74019 |
Target: 5'- ---uGAGGGACCAcCGGCGUcgGCGCCc -3' miRNA: 3'- cuuuUUUUUUGGU-GUCGCGuaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 65228 | 0.7 | 0.998529 |
Target: 5'- ----cGAAuACCGCAGaGCG-GCGCCg -3' miRNA: 3'- cuuuuUUUuUGGUGUCgCGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 66802 | 0.66 | 0.999991 |
Target: 5'- --cGGGAGGAUCACGGCcgagcggggccgGCccggguggccgguGUGCGCCg -3' miRNA: 3'- cuuUUUUUUUGGUGUCG------------CG-------------UACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 67350 | 0.67 | 0.999937 |
Target: 5'- cGggGAGccgaucAGGGCCGCccccccGCGCAUGgUGCCc -3' miRNA: 3'- -CuuUUU------UUUUGGUGu-----CGCGUAC-GCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 67473 | 0.68 | 0.999854 |
Target: 5'- -------cAACCACAGCGUGcugGcCGCCc -3' miRNA: 3'- cuuuuuuuUUGGUGUCGCGUa--C-GCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 67537 | 0.69 | 0.999494 |
Target: 5'- ---cGAGAGAUCGgggGGCGCAggacGCGCCg -3' miRNA: 3'- cuuuUUUUUUGGUg--UCGCGUa---CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 68276 | 0.67 | 0.999889 |
Target: 5'- -------uGGCCACGGCcaaGCugcGCGCCg -3' miRNA: 3'- cuuuuuuuUUGGUGUCG---CGua-CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 70630 | 0.76 | 0.948426 |
Target: 5'- -----cGAAACCACGGCGCAccugggggUGUGCg -3' miRNA: 3'- cuuuuuUUUUGGUGUCGCGU--------ACGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 70850 | 0.68 | 0.999685 |
Target: 5'- ------cAAGCCGCGGCGCGgcCGCg -3' miRNA: 3'- cuuuuuuUUUGGUGUCGCGUacGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 70985 | 0.77 | 0.921739 |
Target: 5'- -------cGGCCAUccgagagguaauGGCGCAUGCGCCc -3' miRNA: 3'- cuuuuuuuUUGGUG------------UCGCGUACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 71967 | 0.7 | 0.998212 |
Target: 5'- ------uGGGCCGCcGCGCAUGUGUUc -3' miRNA: 3'- cuuuuuuUUUGGUGuCGCGUACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 72020 | 0.66 | 0.999987 |
Target: 5'- ----cAGGGGCgCGCGGCGgAcUGCGCUg -3' miRNA: 3'- cuuuuUUUUUG-GUGUCGCgU-ACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 72347 | 0.66 | 0.999991 |
Target: 5'- ----cGGGAGCCAUGGUGUuuuucGUGCCg -3' miRNA: 3'- cuuuuUUUUUGGUGUCGCGua---CGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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