miRNA display CGI


Results 101 - 120 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5792 3' -45.3 NC_001806.1 + 74503 0.66 0.999994
Target:  5'- ------cGAGCUGCGGCGCuucGaCGCCc -3'
miRNA:   3'- cuuuuuuUUUGGUGUCGCGua-C-GCGG- -5'
5792 3' -45.3 NC_001806.1 + 74619 0.76 0.948426
Target:  5'- ----cAGAGGCCAC-GCGCAUG-GCCg -3'
miRNA:   3'- cuuuuUUUUUGGUGuCGCGUACgCGG- -5'
5792 3' -45.3 NC_001806.1 + 75558 0.67 0.999913
Target:  5'- cGAAGGGAcgGCCGgggaccacuccccCAGCGgGcGCGCCc -3'
miRNA:   3'- -CUUUUUUuuUGGU-------------GUCGCgUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 75673 0.7 0.99784
Target:  5'- aGAGAGAAGAUgGCGGCcCAgcGCGCCc -3'
miRNA:   3'- cUUUUUUUUUGgUGUCGcGUa-CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 75705 0.69 0.999365
Target:  5'- -------uAGCCACgAGCGC-UGgGCCg -3'
miRNA:   3'- cuuuuuuuUUGGUG-UCGCGuACgCGG- -5'
5792 3' -45.3 NC_001806.1 + 76297 0.66 0.999972
Target:  5'- cGGAGGAGAuauCCGCGGUGCGcaacgacccggcgGCgGCCg -3'
miRNA:   3'- -CUUUUUUUuu-GGUGUCGCGUa------------CG-CGG- -5'
5792 3' -45.3 NC_001806.1 + 76435 0.66 0.999982
Target:  5'- ---uGAAGGA-CACGGCGUAcGCGCa -3'
miRNA:   3'- cuuuUUUUUUgGUGUCGCGUaCGCGg -5'
5792 3' -45.3 NC_001806.1 + 76563 0.76 0.943652
Target:  5'- cGGGAGGugcuGGCCGC-GCGCGaGCGCCg -3'
miRNA:   3'- -CUUUUUuu--UUGGUGuCGCGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 77099 0.66 0.999982
Target:  5'- --------uACCAgGGCGUccuggGCGCCa -3'
miRNA:   3'- cuuuuuuuuUGGUgUCGCGua---CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 77145 0.66 0.999987
Target:  5'- --uGGAGGAGCUcggGgGGCGCGUG-GCCc -3'
miRNA:   3'- cuuUUUUUUUGG---UgUCGCGUACgCGG- -5'
5792 3' -45.3 NC_001806.1 + 77368 0.67 0.999916
Target:  5'- -----cAAGGCCACaggccagacgGGCGCggGCGCg -3'
miRNA:   3'- cuuuuuUUUUGGUG----------UCGCGuaCGCGg -5'
5792 3' -45.3 NC_001806.1 + 77474 0.68 0.999685
Target:  5'- cAAGAGGccGAcCCGCAGaUGC-UGCGCCg -3'
miRNA:   3'- cUUUUUU--UUuGGUGUC-GCGuACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 78333 0.76 0.938598
Target:  5'- cGAGcuGGGAACCG-AGCGCG-GCGCCg -3'
miRNA:   3'- -CUUuuUUUUUGGUgUCGCGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 80023 0.69 0.999209
Target:  5'- ------cGGGCCGCAGCG---GCGCCu -3'
miRNA:   3'- cuuuuuuUUUGGUGUCGCguaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 81819 0.69 0.999365
Target:  5'- ---uAAGAccCCGCAGgGCcUGUGCCa -3'
miRNA:   3'- cuuuUUUUuuGGUGUCgCGuACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 82048 0.72 0.991899
Target:  5'- cGAAAcgcGAGcuGCaCGCGGgGCAUGCGCa -3'
miRNA:   3'- -CUUU---UUUuuUG-GUGUCgCGUACGCGg -5'
5792 3' -45.3 NC_001806.1 + 82945 0.71 0.994879
Target:  5'- -----uGGGACCGCAGCGCGcagucggggauUGUGUCc -3'
miRNA:   3'- cuuuuuUUUUGGUGUCGCGU-----------ACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 82980 0.73 0.981954
Target:  5'- ----uAAAGuUCGCuGGCGCGUGCGCCc -3'
miRNA:   3'- cuuuuUUUUuGGUG-UCGCGUACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 83484 0.66 0.999975
Target:  5'- ----cAAAuGCCugGGgGCGccccacUGCGCCg -3'
miRNA:   3'- cuuuuUUUuUGGugUCgCGU------ACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 85016 0.66 0.999975
Target:  5'- cGAGGAGAucGCCAUcguGCGCucgcucucgGUGCCc -3'
miRNA:   3'- -CUUUUUUuuUGGUGu--CGCGua-------CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.