miRNA display CGI


Results 121 - 140 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5792 3' -45.3 NC_001806.1 + 88054 0.69 0.999365
Target:  5'- -----cAGAACCACGG-GCGUGgGCa -3'
miRNA:   3'- cuuuuuUUUUGGUGUCgCGUACgCGg -5'
5792 3' -45.3 NC_001806.1 + 88672 0.76 0.933262
Target:  5'- -----cAGGGCCGCGGC-CAUGCGCUc -3'
miRNA:   3'- cuuuuuUUUUGGUGUCGcGUACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 88864 0.68 0.99981
Target:  5'- uGGAAcuGGGCCGC-GCGCAUGcCGUa -3'
miRNA:   3'- cUUUUuuUUUGGUGuCGCGUAC-GCGg -5'
5792 3' -45.3 NC_001806.1 + 88976 0.71 0.994879
Target:  5'- ---------cCCACAgGCGCGaGCGCCg -3'
miRNA:   3'- cuuuuuuuuuGGUGU-CGCGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 89527 0.69 0.999209
Target:  5'- ------cGAGCUGCuGCGCG-GCGCCc -3'
miRNA:   3'- cuuuuuuUUUGGUGuCGCGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 89613 0.66 0.999982
Target:  5'- aGGAGAGugacguAGCCGguGgGCGUG-GCCg -3'
miRNA:   3'- -CUUUUUuu----UUGGUguCgCGUACgCGG- -5'
5792 3' -45.3 NC_001806.1 + 92435 0.75 0.961112
Target:  5'- ----cAAGAGCCGCguguuguucgcgGGCGCGaGCGCCa -3'
miRNA:   3'- cuuuuUUUUUGGUG------------UCGCGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 92477 0.7 0.998529
Target:  5'- -----cGAGGCCGCcaaGGCGCggGuCGCCa -3'
miRNA:   3'- cuuuuuUUUUGGUG---UCGCGuaC-GCGG- -5'
5792 3' -45.3 NC_001806.1 + 93409 0.66 0.999994
Target:  5'- cGAGGAGAugaugGAGCUgACcGCGCGUGC-CCu -3'
miRNA:   3'- -CUUUUUU-----UUUGG-UGuCGCGUACGcGG- -5'
5792 3' -45.3 NC_001806.1 + 93981 0.66 0.999987
Target:  5'- -------cGGCCGCGGUaCAgaucgGCGCCg -3'
miRNA:   3'- cuuuuuuuUUGGUGUCGcGUa----CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 94764 0.68 0.999685
Target:  5'- -------cGACCGC-GCGCggGCGCUc -3'
miRNA:   3'- cuuuuuuuUUGGUGuCGCGuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 95297 0.68 0.99981
Target:  5'- gGggGcgGGGGgCGCGGCGgAcGCGCCc -3'
miRNA:   3'- -CuuUuuUUUUgGUGUCGCgUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 96604 0.66 0.999994
Target:  5'- -----cAAAGCCGCcGCGCcc-CGCCg -3'
miRNA:   3'- cuuuuuUUUUGGUGuCGCGuacGCGG- -5'
5792 3' -45.3 NC_001806.1 + 98958 0.72 0.993016
Target:  5'- aAGAAGAAGGgCACgAGCGCGcugcucaGCGCCa -3'
miRNA:   3'- cUUUUUUUUUgGUG-UCGCGUa------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 99098 0.73 0.989246
Target:  5'- uAAAuAAAAACCACGGguguuaaacCGCAUGUGCa -3'
miRNA:   3'- cUUUuUUUUUGGUGUC---------GCGUACGCGg -5'
5792 3' -45.3 NC_001806.1 + 99806 0.67 0.999916
Target:  5'- --------cACCugAGgGCGauagUGCGCCa -3'
miRNA:   3'- cuuuuuuuuUGGugUCgCGU----ACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 100387 0.66 0.999991
Target:  5'- --------cGCCggGCGGCGCggGgGCCg -3'
miRNA:   3'- cuuuuuuuuUGG--UGUCGCGuaCgCGG- -5'
5792 3' -45.3 NC_001806.1 + 100894 0.69 0.999599
Target:  5'- --------cGCgCACAGCGCGacgUGCGCg -3'
miRNA:   3'- cuuuuuuuuUG-GUGUCGCGU---ACGCGg -5'
5792 3' -45.3 NC_001806.1 + 101040 0.72 0.990646
Target:  5'- ----cGAAAAUCGCAGCGCugGCgGCCg -3'
miRNA:   3'- cuuuuUUUUUGGUGUCGCGuaCG-CGG- -5'
5792 3' -45.3 NC_001806.1 + 102267 0.66 0.999992
Target:  5'- uGAGGAAcgcGGCgGCGGCGCgGuuuaugucgucguggUGCGCCa -3'
miRNA:   3'- -CUUUUUuu-UUGgUGUCGCG-U---------------ACGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.