miRNA display CGI


Results 21 - 40 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5792 3' -45.3 NC_001806.1 + 135765 0.67 0.999937
Target:  5'- cGGAAGGccuggcGAAGCUGCGGCGCc--CGCCc -3'
miRNA:   3'- -CUUUUU------UUUUGGUGUCGCGuacGCGG- -5'
5792 3' -45.3 NC_001806.1 + 135106 0.68 0.999685
Target:  5'- gGGGAGGGGGGCggggGCAGCGC-UGCGUg -3'
miRNA:   3'- -CUUUUUUUUUGg---UGUCGCGuACGCGg -5'
5792 3' -45.3 NC_001806.1 + 132658 0.66 0.999991
Target:  5'- -----cGGGGCCGCGGCcGCuuaCGCCg -3'
miRNA:   3'- cuuuuuUUUUGGUGUCG-CGuacGCGG- -5'
5792 3' -45.3 NC_001806.1 + 132219 0.66 0.999987
Target:  5'- ---------cCCAguGCGCGUcCGCCg -3'
miRNA:   3'- cuuuuuuuuuGGUguCGCGUAcGCGG- -5'
5792 3' -45.3 NC_001806.1 + 131193 0.69 0.999021
Target:  5'- -------cGACCACAGCGCc--UGCCg -3'
miRNA:   3'- cuuuuuuuUUGGUGUCGCGuacGCGG- -5'
5792 3' -45.3 NC_001806.1 + 130976 0.75 0.961112
Target:  5'- -cGGAGGAAGCCGucaAGCGCGU-CGCCg -3'
miRNA:   3'- cuUUUUUUUUGGUg--UCGCGUAcGCGG- -5'
5792 3' -45.3 NC_001806.1 + 129334 0.67 0.999966
Target:  5'- ---uGGAAAGCCuuCAuCGCGUGgGCCc -3'
miRNA:   3'- cuuuUUUUUUGGu-GUcGCGUACgCGG- -5'
5792 3' -45.3 NC_001806.1 + 128220 0.67 0.999966
Target:  5'- --cAGGGAuACCGCGGCGUcgGcCGUg -3'
miRNA:   3'- cuuUUUUUuUGGUGUCGCGuaC-GCGg -5'
5792 3' -45.3 NC_001806.1 + 127826 0.66 0.999987
Target:  5'- --cGGAAuGugCGCGgugucgcgugucGCGCAUGCGCa -3'
miRNA:   3'- cuuUUUUuUugGUGU------------CGCGUACGCGg -5'
5792 3' -45.3 NC_001806.1 + 126132 0.67 0.999916
Target:  5'- ---cGGAcGACgGCGGCgagGCcgGCGCCg -3'
miRNA:   3'- cuuuUUUuUUGgUGUCG---CGuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 125860 0.67 0.999889
Target:  5'- --------cGCCGCGGaCGCcgugGCGCCc -3'
miRNA:   3'- cuuuuuuuuUGGUGUC-GCGua--CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 125711 0.66 0.999987
Target:  5'- ----------gCGCGGCGUccGCGCCc -3'
miRNA:   3'- cuuuuuuuuugGUGUCGCGuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 125245 0.66 0.999981
Target:  5'- cGGAAAugGAGuCCACGGUaggcccaGCAUGUccGCCg -3'
miRNA:   3'- -CUUUUuuUUU-GGUGUCG-------CGUACG--CGG- -5'
5792 3' -45.3 NC_001806.1 + 122282 0.67 0.999937
Target:  5'- cGAAAGGAGGCCagcgACAGCGCGaugagGgGCa -3'
miRNA:   3'- cUUUUUUUUUGG----UGUCGCGUa----CgCGg -5'
5792 3' -45.3 NC_001806.1 + 121405 0.7 0.998212
Target:  5'- -----cGGAGCCG-GGCGCGugcUGCGCCu -3'
miRNA:   3'- cuuuuuUUUUGGUgUCGCGU---ACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 120151 0.73 0.989246
Target:  5'- ----cGAAucUCACAGCGCcUGCGCUa -3'
miRNA:   3'- cuuuuUUUuuGGUGUCGCGuACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 119934 0.71 0.997406
Target:  5'- --------cGCCGCAgaacGCGuCGUGCGCCc -3'
miRNA:   3'- cuuuuuuuuUGGUGU----CGC-GUACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 119543 0.69 0.999365
Target:  5'- ------cAGGCCGuCAGCGgGgGCGCCa -3'
miRNA:   3'- cuuuuuuUUUGGU-GUCGCgUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 119026 0.71 0.996901
Target:  5'- --------cGCCgugGCGGCGC-UGCGCCu -3'
miRNA:   3'- cuuuuuuuuUGG---UGUCGCGuACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 118862 0.66 0.999975
Target:  5'- ------uGGugCACGGCGUuUGcCGCCu -3'
miRNA:   3'- cuuuuuuUUugGUGUCGCGuAC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.