Results 61 - 80 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5792 | 3' | -45.3 | NC_001806.1 | + | 98958 | 0.72 | 0.993016 |
Target: 5'- aAGAAGAAGGgCACgAGCGCGcugcucaGCGCCa -3' miRNA: 3'- cUUUUUUUUUgGUG-UCGCGUa------CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 96604 | 0.66 | 0.999994 |
Target: 5'- -----cAAAGCCGCcGCGCcc-CGCCg -3' miRNA: 3'- cuuuuuUUUUGGUGuCGCGuacGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 95297 | 0.68 | 0.99981 |
Target: 5'- gGggGcgGGGGgCGCGGCGgAcGCGCCc -3' miRNA: 3'- -CuuUuuUUUUgGUGUCGCgUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 94764 | 0.68 | 0.999685 |
Target: 5'- -------cGACCGC-GCGCggGCGCUc -3' miRNA: 3'- cuuuuuuuUUGGUGuCGCGuaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 93981 | 0.66 | 0.999987 |
Target: 5'- -------cGGCCGCGGUaCAgaucgGCGCCg -3' miRNA: 3'- cuuuuuuuUUGGUGUCGcGUa----CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 93409 | 0.66 | 0.999994 |
Target: 5'- cGAGGAGAugaugGAGCUgACcGCGCGUGC-CCu -3' miRNA: 3'- -CUUUUUU-----UUUGG-UGuCGCGUACGcGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 92477 | 0.7 | 0.998529 |
Target: 5'- -----cGAGGCCGCcaaGGCGCggGuCGCCa -3' miRNA: 3'- cuuuuuUUUUGGUG---UCGCGuaC-GCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 92435 | 0.75 | 0.961112 |
Target: 5'- ----cAAGAGCCGCguguuguucgcgGGCGCGaGCGCCa -3' miRNA: 3'- cuuuuUUUUUGGUG------------UCGCGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 89613 | 0.66 | 0.999982 |
Target: 5'- aGGAGAGugacguAGCCGguGgGCGUG-GCCg -3' miRNA: 3'- -CUUUUUuu----UUGGUguCgCGUACgCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 89527 | 0.69 | 0.999209 |
Target: 5'- ------cGAGCUGCuGCGCG-GCGCCc -3' miRNA: 3'- cuuuuuuUUUGGUGuCGCGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 88976 | 0.71 | 0.994879 |
Target: 5'- ---------cCCACAgGCGCGaGCGCCg -3' miRNA: 3'- cuuuuuuuuuGGUGU-CGCGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 88864 | 0.68 | 0.99981 |
Target: 5'- uGGAAcuGGGCCGC-GCGCAUGcCGUa -3' miRNA: 3'- cUUUUuuUUUGGUGuCGCGUAC-GCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 88672 | 0.76 | 0.933262 |
Target: 5'- -----cAGGGCCGCGGC-CAUGCGCUc -3' miRNA: 3'- cuuuuuUUUUGGUGUCGcGUACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 88054 | 0.69 | 0.999365 |
Target: 5'- -----cAGAACCACGG-GCGUGgGCa -3' miRNA: 3'- cuuuuuUUUUGGUGUCgCGUACgCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 85016 | 0.66 | 0.999975 |
Target: 5'- cGAGGAGAucGCCAUcguGCGCucgcucucgGUGCCc -3' miRNA: 3'- -CUUUUUUuuUGGUGu--CGCGua-------CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 83484 | 0.66 | 0.999975 |
Target: 5'- ----cAAAuGCCugGGgGCGccccacUGCGCCg -3' miRNA: 3'- cuuuuUUUuUGGugUCgCGU------ACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 82980 | 0.73 | 0.981954 |
Target: 5'- ----uAAAGuUCGCuGGCGCGUGCGCCc -3' miRNA: 3'- cuuuuUUUUuGGUG-UCGCGUACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 82945 | 0.71 | 0.994879 |
Target: 5'- -----uGGGACCGCAGCGCGcagucggggauUGUGUCc -3' miRNA: 3'- cuuuuuUUUUGGUGUCGCGU-----------ACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 82048 | 0.72 | 0.991899 |
Target: 5'- cGAAAcgcGAGcuGCaCGCGGgGCAUGCGCa -3' miRNA: 3'- -CUUU---UUUuuUG-GUGUCgCGUACGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 81819 | 0.69 | 0.999365 |
Target: 5'- ---uAAGAccCCGCAGgGCcUGUGCCa -3' miRNA: 3'- cuuuUUUUuuGGUGUCgCGuACGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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