Results 81 - 100 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5792 | 3' | -45.3 | NC_001806.1 | + | 80023 | 0.69 | 0.999209 |
Target: 5'- ------cGGGCCGCAGCG---GCGCCu -3' miRNA: 3'- cuuuuuuUUUGGUGUCGCguaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 78333 | 0.76 | 0.938598 |
Target: 5'- cGAGcuGGGAACCG-AGCGCG-GCGCCg -3' miRNA: 3'- -CUUuuUUUUUGGUgUCGCGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 77474 | 0.68 | 0.999685 |
Target: 5'- cAAGAGGccGAcCCGCAGaUGC-UGCGCCg -3' miRNA: 3'- cUUUUUU--UUuGGUGUC-GCGuACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 77368 | 0.67 | 0.999916 |
Target: 5'- -----cAAGGCCACaggccagacgGGCGCggGCGCg -3' miRNA: 3'- cuuuuuUUUUGGUG----------UCGCGuaCGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 77145 | 0.66 | 0.999987 |
Target: 5'- --uGGAGGAGCUcggGgGGCGCGUG-GCCc -3' miRNA: 3'- cuuUUUUUUUGG---UgUCGCGUACgCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 77099 | 0.66 | 0.999982 |
Target: 5'- --------uACCAgGGCGUccuggGCGCCa -3' miRNA: 3'- cuuuuuuuuUGGUgUCGCGua---CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 76563 | 0.76 | 0.943652 |
Target: 5'- cGGGAGGugcuGGCCGC-GCGCGaGCGCCg -3' miRNA: 3'- -CUUUUUuu--UUGGUGuCGCGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 76435 | 0.66 | 0.999982 |
Target: 5'- ---uGAAGGA-CACGGCGUAcGCGCa -3' miRNA: 3'- cuuuUUUUUUgGUGUCGCGUaCGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 76297 | 0.66 | 0.999972 |
Target: 5'- cGGAGGAGAuauCCGCGGUGCGcaacgacccggcgGCgGCCg -3' miRNA: 3'- -CUUUUUUUuu-GGUGUCGCGUa------------CG-CGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 75705 | 0.69 | 0.999365 |
Target: 5'- -------uAGCCACgAGCGC-UGgGCCg -3' miRNA: 3'- cuuuuuuuUUGGUG-UCGCGuACgCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 75673 | 0.7 | 0.99784 |
Target: 5'- aGAGAGAAGAUgGCGGCcCAgcGCGCCc -3' miRNA: 3'- cUUUUUUUUUGgUGUCGcGUa-CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 75558 | 0.67 | 0.999913 |
Target: 5'- cGAAGGGAcgGCCGgggaccacuccccCAGCGgGcGCGCCc -3' miRNA: 3'- -CUUUUUUuuUGGU-------------GUCGCgUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 74619 | 0.76 | 0.948426 |
Target: 5'- ----cAGAGGCCAC-GCGCAUG-GCCg -3' miRNA: 3'- cuuuuUUUUUGGUGuCGCGUACgCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 74503 | 0.66 | 0.999994 |
Target: 5'- ------cGAGCUGCGGCGCuucGaCGCCc -3' miRNA: 3'- cuuuuuuUUUGGUGUCGCGua-C-GCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 72347 | 0.66 | 0.999991 |
Target: 5'- ----cGGGAGCCAUGGUGUuuuucGUGCCg -3' miRNA: 3'- cuuuuUUUUUGGUGUCGCGua---CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 72020 | 0.66 | 0.999987 |
Target: 5'- ----cAGGGGCgCGCGGCGgAcUGCGCUg -3' miRNA: 3'- cuuuuUUUUUG-GUGUCGCgU-ACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 71967 | 0.7 | 0.998212 |
Target: 5'- ------uGGGCCGCcGCGCAUGUGUUc -3' miRNA: 3'- cuuuuuuUUUGGUGuCGCGUACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 70985 | 0.77 | 0.921739 |
Target: 5'- -------cGGCCAUccgagagguaauGGCGCAUGCGCCc -3' miRNA: 3'- cuuuuuuuUUGGUG------------UCGCGUACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 70850 | 0.68 | 0.999685 |
Target: 5'- ------cAAGCCGCGGCGCGgcCGCg -3' miRNA: 3'- cuuuuuuUUUGGUGUCGCGUacGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 70630 | 0.76 | 0.948426 |
Target: 5'- -----cGAAACCACGGCGCAccugggggUGUGCg -3' miRNA: 3'- cuuuuuUUUUGGUGUCGCGU--------ACGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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