miRNA display CGI


Results 101 - 120 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5792 3' -45.3 NC_001806.1 + 68276 0.67 0.999889
Target:  5'- -------uGGCCACGGCcaaGCugcGCGCCg -3'
miRNA:   3'- cuuuuuuuUUGGUGUCG---CGua-CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 67537 0.69 0.999494
Target:  5'- ---cGAGAGAUCGgggGGCGCAggacGCGCCg -3'
miRNA:   3'- cuuuUUUUUUGGUg--UCGCGUa---CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 67473 0.68 0.999854
Target:  5'- -------cAACCACAGCGUGcugGcCGCCc -3'
miRNA:   3'- cuuuuuuuUUGGUGUCGCGUa--C-GCGG- -5'
5792 3' -45.3 NC_001806.1 + 67350 0.67 0.999937
Target:  5'- cGggGAGccgaucAGGGCCGCccccccGCGCAUGgUGCCc -3'
miRNA:   3'- -CuuUUU------UUUUGGUGu-----CGCGUAC-GCGG- -5'
5792 3' -45.3 NC_001806.1 + 66802 0.66 0.999991
Target:  5'- --cGGGAGGAUCACGGCcgagcggggccgGCccggguggccgguGUGCGCCg -3'
miRNA:   3'- cuuUUUUUUUGGUGUCG------------CG-------------UACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 65228 0.7 0.998529
Target:  5'- ----cGAAuACCGCAGaGCG-GCGCCg -3'
miRNA:   3'- cuuuuUUUuUGGUGUCgCGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 64944 0.81 0.74019
Target:  5'- ---uGAGGGACCAcCGGCGUcgGCGCCc -3'
miRNA:   3'- cuuuUUUUUUGGU-GUCGCGuaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 63771 0.68 0.999854
Target:  5'- --------uGCCACGGCuccagguacacGCAcGCGCCg -3'
miRNA:   3'- cuuuuuuuuUGGUGUCG-----------CGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 63694 0.69 0.999599
Target:  5'- uGAAGAuAuuGUCGCAGCGC-UGgGCCu -3'
miRNA:   3'- -CUUUUuUuuUGGUGUCGCGuACgCGG- -5'
5792 3' -45.3 NC_001806.1 + 63004 0.67 0.999889
Target:  5'- uGAAGGGAcgggccccgcGAACgCACAGCGCGuUGCuggucuucaucGCCg -3'
miRNA:   3'- -CUUUUUU----------UUUG-GUGUCGCGU-ACG-----------CGG- -5'
5792 3' -45.3 NC_001806.1 + 62641 0.67 0.999953
Target:  5'- --------cACgGgAGCGCcUGCGCCa -3'
miRNA:   3'- cuuuuuuuuUGgUgUCGCGuACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 59348 0.68 0.999854
Target:  5'- gGGAAGGuuGGCCcgcacCGGCGCAUGCaggguGCUg -3'
miRNA:   3'- -CUUUUUuuUUGGu----GUCGCGUACG-----CGG- -5'
5792 3' -45.3 NC_001806.1 + 56881 0.66 0.999994
Target:  5'- --------cACCAgAGCGCGcGCuGCCu -3'
miRNA:   3'- cuuuuuuuuUGGUgUCGCGUaCG-CGG- -5'
5792 3' -45.3 NC_001806.1 + 56498 0.71 0.995646
Target:  5'- cGAGAAAcaccuGGGGCCACAGCgGCAgGC-CCg -3'
miRNA:   3'- -CUUUUU-----UUUUGGUGUCG-CGUaCGcGG- -5'
5792 3' -45.3 NC_001806.1 + 56302 0.67 0.999937
Target:  5'- -----cGGAGCCcCAGCaCcUGCGCCa -3'
miRNA:   3'- cuuuuuUUUUGGuGUCGcGuACGCGG- -5'
5792 3' -45.3 NC_001806.1 + 56231 0.69 0.999494
Target:  5'- aGAAGAAGAGGCCccgaAGCGUcgcCGCCa -3'
miRNA:   3'- -CUUUUUUUUUGGug--UCGCGuacGCGG- -5'
5792 3' -45.3 NC_001806.1 + 53626 0.75 0.964811
Target:  5'- aGAGGAGAcgagacAGACCGCAGUaCAcGCGCCu -3'
miRNA:   3'- -CUUUUUU------UUUGGUGUCGcGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 51389 0.67 0.999916
Target:  5'- --cGGAGGGGCUccuUAGCGCGgccguggGCGCCu -3'
miRNA:   3'- cuuUUUUUUUGGu--GUCGCGUa------CGCGG- -5'
5792 3' -45.3 NC_001806.1 + 51098 0.69 0.999209
Target:  5'- aGAcGAGGGGGCCGCcgcccugcgGGCGCAcGUGUCg -3'
miRNA:   3'- -CUuUUUUUUUGGUG---------UCGCGUaCGCGG- -5'
5792 3' -45.3 NC_001806.1 + 50905 0.66 0.999994
Target:  5'- -------cGGCCGCGGaGCAcguggaucUGCGCCc -3'
miRNA:   3'- cuuuuuuuUUGGUGUCgCGU--------ACGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.