Results 121 - 140 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5792 | 3' | -45.3 | NC_001806.1 | + | 50541 | 0.69 | 0.999021 |
Target: 5'- --------cACCGCAGCGCGccggcUGCucGCCa -3' miRNA: 3'- cuuuuuuuuUGGUGUCGCGU-----ACG--CGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 50332 | 0.66 | 0.999991 |
Target: 5'- ---cGGGAGGCCGCcuuccuggGGCGCGUGCuggauguGCUg -3' miRNA: 3'- cuuuUUUUUUGGUG--------UCGCGUACG-------CGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 49252 | 0.67 | 0.999953 |
Target: 5'- gGAGGAGAuggcGGGCgACgAGcCGCccGUGCGCCg -3' miRNA: 3'- -CUUUUUU----UUUGgUG-UC-GCG--UACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 47706 | 0.67 | 0.999937 |
Target: 5'- --------cACCGCcaGGCGCAcaUGCGCg -3' miRNA: 3'- cuuuuuuuuUGGUG--UCGCGU--ACGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 46111 | 0.67 | 0.999937 |
Target: 5'- -----cGGGGCCu--GCGCggGCGCCu -3' miRNA: 3'- cuuuuuUUUUGGuguCGCGuaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 45116 | 0.67 | 0.999953 |
Target: 5'- ---cGAGuAGCgACGGC-CGUGUGCCa -3' miRNA: 3'- cuuuUUUuUUGgUGUCGcGUACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 44644 | 0.69 | 0.999021 |
Target: 5'- ---cGAGGGACCGCccucGGCGUc-GCGCCg -3' miRNA: 3'- cuuuUUUUUUGGUG----UCGCGuaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 43293 | 0.7 | 0.998212 |
Target: 5'- cGGAGGcgGAGCCGCGGCuGCAggagGC-CCu -3' miRNA: 3'- -CUUUUuuUUUGGUGUCG-CGUa---CGcGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 42633 | 0.67 | 0.999916 |
Target: 5'- --------cGCCGCGGCGgCGUcGCGUCc -3' miRNA: 3'- cuuuuuuuuUGGUGUCGC-GUA-CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 41424 | 0.69 | 0.999209 |
Target: 5'- --------uGCC-CAGCGCGccguggucggggUGCGCCg -3' miRNA: 3'- cuuuuuuuuUGGuGUCGCGU------------ACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 41195 | 0.71 | 0.997406 |
Target: 5'- aGGAGcuGAACCGCAGC-CAgagccccGCGCCu -3' miRNA: 3'- cUUUUuuUUUGGUGUCGcGUa------CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 40569 | 0.7 | 0.998796 |
Target: 5'- uGAAAaugGAAGcGCCGCGGgucgGCGUGCGCg -3' miRNA: 3'- -CUUU---UUUUuUGGUGUCg---CGUACGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 37918 | 0.66 | 0.999982 |
Target: 5'- --------cGCCAUgggGGCGCcgGgGCCg -3' miRNA: 3'- cuuuuuuuuUGGUG---UCGCGuaCgCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 37296 | 0.81 | 0.761185 |
Target: 5'- uGGAGAAAGGGCCGCAgGCGCGUG-GCg -3' miRNA: 3'- -CUUUUUUUUUGGUGU-CGCGUACgCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 35580 | 0.69 | 0.999365 |
Target: 5'- ------cGAACgACGuGCGCA-GCGCCg -3' miRNA: 3'- cuuuuuuUUUGgUGU-CGCGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 35551 | 0.74 | 0.974415 |
Target: 5'- ------cGAGCCGCucGGCGCGcccgGCGCCg -3' miRNA: 3'- cuuuuuuUUUGGUG--UCGCGUa---CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 33723 | 0.66 | 0.999994 |
Target: 5'- --------uGCCGCuugugAGUGCGcGCGCCg -3' miRNA: 3'- cuuuuuuuuUGGUG-----UCGCGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 33373 | 0.7 | 0.998796 |
Target: 5'- ---cGGAGAGCCGCGGCaccCGgacGCGCCc -3' miRNA: 3'- cuuuUUUUUUGGUGUCGc--GUa--CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 33290 | 0.72 | 0.990646 |
Target: 5'- cGAAAAAAcAGACCAgCGGCcgGCcgGCGCUu -3' miRNA: 3'- -CUUUUUU-UUUGGU-GUCG--CGuaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 32919 | 0.99 | 0.109189 |
Target: 5'- gGAAAAAAAAACCACA-CGCAUGCGCCg -3' miRNA: 3'- -CUUUUUUUUUGGUGUcGCGUACGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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