Results 41 - 60 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5792 | 3' | -45.3 | NC_001806.1 | + | 145025 | 0.79 | 0.82978 |
Target: 5'- -------cGGCC-CGGCGCAUGCGCUg -3' miRNA: 3'- cuuuuuuuUUGGuGUCGCGUACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 37296 | 0.81 | 0.761185 |
Target: 5'- uGGAGAAAGGGCCGCAgGCGCGUG-GCg -3' miRNA: 3'- -CUUUUUUUUUGGUGU-CGCGUACgCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 64944 | 0.81 | 0.74019 |
Target: 5'- ---uGAGGGACCAcCGGCGUcgGCGCCc -3' miRNA: 3'- cuuuUUUUUUGGU-GUCGCGuaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 112947 | 0.84 | 0.608093 |
Target: 5'- uGggGGAAGGACCGCcaGGUGC-UGCGCCu -3' miRNA: 3'- -CuuUUUUUUUGGUG--UCGCGuACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 145577 | 0.89 | 0.390768 |
Target: 5'- uGGAAGGAAAugCACGGCGCGUGUGUa -3' miRNA: 3'- -CUUUUUUUUugGUGUCGCGUACGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 74619 | 0.76 | 0.948426 |
Target: 5'- ----cAGAGGCCAC-GCGCAUG-GCCg -3' miRNA: 3'- cuuuuUUUUUGGUGuCGCGUACgCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 92435 | 0.75 | 0.961112 |
Target: 5'- ----cAAGAGCCGCguguuguucgcgGGCGCGaGCGCCa -3' miRNA: 3'- cuuuuUUUUUGGUG------------UCGCGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 101040 | 0.72 | 0.990646 |
Target: 5'- ----cGAAAAUCGCAGCGCugGCgGCCg -3' miRNA: 3'- cuuuuUUUUUGGUGUCGCGuaCG-CGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 120151 | 0.73 | 0.989246 |
Target: 5'- ----cGAAucUCACAGCGCcUGCGCUa -3' miRNA: 3'- cuuuuUUUuuGGUGUCGCGuACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 99098 | 0.73 | 0.989246 |
Target: 5'- uAAAuAAAAACCACGGguguuaaacCGCAUGUGCa -3' miRNA: 3'- cUUUuUUUUUGGUGUC---------GCGUACGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 24302 | 0.73 | 0.989246 |
Target: 5'- -------uGGCCgGCGGCGCGggaccUGCGCCg -3' miRNA: 3'- cuuuuuuuUUGG-UGUCGCGU-----ACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 29163 | 0.73 | 0.985959 |
Target: 5'- -cGAGGAAGACCccgGCAGuUGCGgggGCGCCc -3' miRNA: 3'- cuUUUUUUUUGG---UGUC-GCGUa--CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 82980 | 0.73 | 0.981954 |
Target: 5'- ----uAAAGuUCGCuGGCGCGUGCGCCc -3' miRNA: 3'- cuuuuUUUUuGGUG-UCGCGUACGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 23474 | 0.74 | 0.977145 |
Target: 5'- --------cGCCGCGGCGCAggcccgcccGCGCCc -3' miRNA: 3'- cuuuuuuuuUGGUGUCGCGUa--------CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 35551 | 0.74 | 0.974415 |
Target: 5'- ------cGAGCCGCucGGCGCGcccgGCGCCg -3' miRNA: 3'- cuuuuuuUUUGGUG--UCGCGUa---CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 3891 | 0.74 | 0.971455 |
Target: 5'- uGAuGAAGGAGCUGCuguuGCGCGcgGCGCCc -3' miRNA: 3'- -CUuUUUUUUUGGUGu---CGCGUa-CGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 1791 | 0.75 | 0.968256 |
Target: 5'- ------cGGGCCGaAGCGCGUGCGCa -3' miRNA: 3'- cuuuuuuUUUGGUgUCGCGUACGCGg -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 3471 | 0.75 | 0.964811 |
Target: 5'- -------cGGCCugGGCGCG-GCGCCc -3' miRNA: 3'- cuuuuuuuUUGGugUCGCGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 53626 | 0.75 | 0.964811 |
Target: 5'- aGAGGAGAcgagacAGACCGCAGUaCAcGCGCCu -3' miRNA: 3'- -CUUUUUU------UUUGGUGUCGcGUaCGCGG- -5' |
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5792 | 3' | -45.3 | NC_001806.1 | + | 130976 | 0.75 | 0.961112 |
Target: 5'- -cGGAGGAAGCCGucaAGCGCGU-CGCCg -3' miRNA: 3'- cuUUUUUUUUGGUg--UCGCGUAcGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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