Results 21 - 40 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5792 | 5' | -69.9 | NC_001806.1 | + | 44690 | 0.66 | 0.34102 |
Target: 5'- uGGGGCCCCGaGcGCCcccuccaaccaaGGaucuucgcguaucccGGCCCCgguuggagGGGg -3' miRNA: 3'- -CCCCGGGGC-C-CGG------------CC---------------CCGGGGaa------CCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 98694 | 0.66 | 0.338263 |
Target: 5'- uGGGGCgCUGG-CCGuGGGUCUgUUGGu -3' miRNA: 3'- -CCCCGgGGCCcGGC-CCCGGGgAACCc -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 56509 | 0.66 | 0.338263 |
Target: 5'- uGGGGCcacagcggcaggCCCGGGCCcGGcGUUCCccGGGc -3' miRNA: 3'- -CCCCG------------GGGCCCGGcCC-CGGGGaaCCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 127536 | 0.66 | 0.33212 |
Target: 5'- cGGGGUCCucggCGGGCuCGGGGucguacCCCCcaacggugucauagaUGGGa -3' miRNA: 3'- -CCCCGGG----GCCCG-GCCCC------GGGGa--------------ACCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 67498 | 0.66 | 0.331443 |
Target: 5'- cGGGGUCCCGaccccCUGGGGagCCCU-GGGc -3' miRNA: 3'- -CCCCGGGGCcc---GGCCCCg-GGGAaCCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 86038 | 0.66 | 0.324724 |
Target: 5'- aGGGCCgCGGGgggggCGGGcucGUCCCcUGGGg -3' miRNA: 3'- cCCCGGgGCCCg----GCCC---CGGGGaACCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 12910 | 0.66 | 0.324724 |
Target: 5'- cGGGGUCCUccaagaGGGCCgaauccucGGGGUCUUccGGGg -3' miRNA: 3'- -CCCCGGGG------CCCGG--------CCCCGGGGaaCCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 23795 | 0.66 | 0.324724 |
Target: 5'- cGGGGCCgCCggGGGCCGccucuuuGGCCCCcUGc- -3' miRNA: 3'- -CCCCGG-GG--CCCGGCc------CCGGGGaACcc -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 22578 | 0.66 | 0.324724 |
Target: 5'- gGGGaGCCCCGGcGCCGGcGCagaugaCgaGGGg -3' miRNA: 3'- -CCC-CGGGGCC-CGGCCcCGgg----GaaCCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 101298 | 0.67 | 0.318764 |
Target: 5'- -cGGCCCuguCGGGCaGGGGCUCCUccauccggucucccgGGGc -3' miRNA: 3'- ccCCGGG---GCCCGgCCCCGGGGAa--------------CCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 4177 | 0.67 | 0.318106 |
Target: 5'- --cGCCCCggGGGCgGGGGCCCggcgccGGGc -3' miRNA: 3'- cccCGGGG--CCCGgCCCCGGGgaa---CCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 95375 | 0.67 | 0.318106 |
Target: 5'- aGGGGCaCggGGGuuGGGaGCUCCcgGGGg -3' miRNA: 3'- -CCCCG-GggCCCggCCC-CGGGGaaCCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 150670 | 0.67 | 0.318106 |
Target: 5'- cGGGCCCCGccgcGCUGGcGGCCgCCgaUGGc -3' miRNA: 3'- cCCCGGGGCc---CGGCC-CCGG-GGa-ACCc -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 25636 | 0.67 | 0.311591 |
Target: 5'- uGGGGCUggggaGGGCUGGGGCUg---GGGa -3' miRNA: 3'- -CCCCGGgg---CCCGGCCCCGGggaaCCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 77504 | 0.67 | 0.311591 |
Target: 5'- cGGGGCgaggcguaCCUGcgagugagcggaGGcCCGGGGCCCCU-GGu -3' miRNA: 3'- -CCCCG--------GGGC------------CC-GGCCCCGGGGAaCCc -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 121411 | 0.67 | 0.311591 |
Target: 5'- cGGGcgcgugcugcGCCuuGGGCCcgGGGGCCUggUGGc -3' miRNA: 3'- -CCC----------CGGggCCCGG--CCCCGGGgaACCc -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 151544 | 0.67 | 0.311591 |
Target: 5'- uGGGCCCgGgcGGCCGGGGgCggcgGGGg -3' miRNA: 3'- cCCCGGGgC--CCGGCCCCgGggaaCCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 79522 | 0.67 | 0.310945 |
Target: 5'- cGGGcGUCCCGGccgaaagcacgcgGCCGGcGCCCg-UGGGc -3' miRNA: 3'- -CCC-CGGGGCC-------------CGGCCcCGGGgaACCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 113383 | 0.67 | 0.305178 |
Target: 5'- cGGcGGCguUCCGGGacgcCCGGGGCCUggagcUGGGg -3' miRNA: 3'- -CC-CCG--GGGCCC----GGCCCCGGGga---ACCC- -5' |
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5792 | 5' | -69.9 | NC_001806.1 | + | 148779 | 0.67 | 0.305178 |
Target: 5'- gGGGGCgccCCCGcaacuGCCGGGGUcuUCCUcgcgGGGg -3' miRNA: 3'- -CCCCG---GGGCc----CGGCCCCG--GGGAa---CCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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