miRNA display CGI


Results 41 - 60 of 219 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5793 3' -63.2 NC_001806.1 + 76834 0.72 0.293485
Target:  5'- gCCCGGGCCuccuacgcgacaggGCGCGcGCCUgcaggCGCUCu -3'
miRNA:   3'- aGGGCCCGGca------------UGCGC-CGGAa----GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 98719 0.72 0.286466
Target:  5'- gUCCuGGCCGgccugGCgGCGGCCUucuUCGCCUu -3'
miRNA:   3'- aGGGcCCGGCa----UG-CGCCGGA---AGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 22879 0.72 0.286466
Target:  5'- gUCCCgGGGCUGgcCGgGGCCcg-GCCCg -3'
miRNA:   3'- -AGGG-CCCGGCauGCgCCGGaagCGGG- -5'
5793 3' -63.2 NC_001806.1 + 150862 0.72 0.280201
Target:  5'- uUCgCCGGGCCGgcucCGCgGGCCaggGCCCg -3'
miRNA:   3'- -AG-GGCCCGGCau--GCG-CCGGaagCGGG- -5'
5793 3' -63.2 NC_001806.1 + 121402 0.72 0.280201
Target:  5'- cCCCGGaGCCGgGCGCGugcugcGCCUUgGgCCCg -3'
miRNA:   3'- aGGGCC-CGGCaUGCGC------CGGAAgC-GGG- -5'
5793 3' -63.2 NC_001806.1 + 35819 0.71 0.347828
Target:  5'- aCUCGGGCgCGUG-GCGGCCUccuagggucaauUCGCgCg -3'
miRNA:   3'- aGGGCCCG-GCAUgCGCCGGA------------AGCGgG- -5'
5793 3' -63.2 NC_001806.1 + 46108 0.71 0.347828
Target:  5'- gCCCgGGGCC-UGCGCGggcGCCUcCGCCa -3'
miRNA:   3'- aGGG-CCCGGcAUGCGC---CGGAaGCGGg -5'
5793 3' -63.2 NC_001806.1 + 73452 0.71 0.347828
Target:  5'- aCCCaGGCCGggguggccgGCcCGGCCgcCGCCCu -3'
miRNA:   3'- aGGGcCCGGCa--------UGcGCCGGaaGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 149846 0.71 0.347828
Target:  5'- cUCCauggGGGUCGUAUGCGGCUggagggUCGCg- -3'
miRNA:   3'- -AGGg---CCCGGCAUGCGCCGGa-----AGCGgg -5'
5793 3' -63.2 NC_001806.1 + 143401 0.71 0.347828
Target:  5'- cCCCGgcGGCCGgguCGCGGCuCUUacgagcgGCCCg -3'
miRNA:   3'- aGGGC--CCGGCau-GCGCCG-GAAg------CGGG- -5'
5793 3' -63.2 NC_001806.1 + 55491 0.71 0.355198
Target:  5'- -aCCGGGCCaauggguCGCGGCggUCGCaCCa -3'
miRNA:   3'- agGGCCCGGcau----GCGCCGgaAGCG-GG- -5'
5793 3' -63.2 NC_001806.1 + 24696 0.71 0.345638
Target:  5'- gCCCGGcCCGgugGCGCgGGCCgcggagggacuuuugCGCCCg -3'
miRNA:   3'- aGGGCCcGGCa--UGCG-CCGGaa-------------GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 104904 0.71 0.340567
Target:  5'- cCCCaGGCCGUGC-UGGCgUUCgugGCCCu -3'
miRNA:   3'- aGGGcCCGGCAUGcGCCGgAAG---CGGG- -5'
5793 3' -63.2 NC_001806.1 + 118760 0.71 0.333416
Target:  5'- cCCCuGGCCGcccugaUGCGCGGCC---GCCCc -3'
miRNA:   3'- aGGGcCCGGC------AUGCGCCGGaagCGGG- -5'
5793 3' -63.2 NC_001806.1 + 125699 0.71 0.333416
Target:  5'- gCgCGGGuuGcUGCGCGGCgUccgCGCCCc -3'
miRNA:   3'- aGgGCCCggC-AUGCGCCGgAa--GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 4741 0.71 0.333416
Target:  5'- cCCCGGGCCGg----GGCCcggUCGCCg -3'
miRNA:   3'- aGGGCCCGGCaugcgCCGGa--AGCGGg -5'
5793 3' -63.2 NC_001806.1 + 141422 0.71 0.331293
Target:  5'- gCCgGGGCgGcGCGCGGCCaaccggcggauaacUcCGCCCa -3'
miRNA:   3'- aGGgCCCGgCaUGCGCCGG--------------AaGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 137203 0.71 0.326377
Target:  5'- gUUCCGGGaCGUG-GCGGCCUUagaGUCCc -3'
miRNA:   3'- -AGGGCCCgGCAUgCGCCGGAAg--CGGG- -5'
5793 3' -63.2 NC_001806.1 + 30288 0.71 0.326377
Target:  5'- cCCCGGGgCGga-GcCGGCCgccCGCCCc -3'
miRNA:   3'- aGGGCCCgGCaugC-GCCGGaa-GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 27049 0.71 0.362678
Target:  5'- -aUCGGGCCGUGCcuGgGGCCcgagGCCCg -3'
miRNA:   3'- agGGCCCGGCAUG--CgCCGGaag-CGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.