Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5793 | 5' | -49.9 | NC_001806.1 | + | 66427 | 0.67 | 0.991096 |
Target: 5'- uGCGGugGGGCGcccccGCAggUCCGGCuGCc -3' miRNA: 3'- -UGUCugCUUGCuu---UGUa-AGGCCGcUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 103938 | 0.67 | 0.991096 |
Target: 5'- cGCGGcUGAcGCGGAGCGUccgUUgGGCGACa -3' miRNA: 3'- -UGUCuGCU-UGCUUUGUA---AGgCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 63927 | 0.67 | 0.991096 |
Target: 5'- uGCGGGCGAggAUGGcacuGACGUUgCUGGUGAUg -3' miRNA: 3'- -UGUCUGCU--UGCU----UUGUAA-GGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 119345 | 0.67 | 0.991096 |
Target: 5'- cCGGAgGAGCagcuGACGgcccCCGGCGGCg -3' miRNA: 3'- uGUCUgCUUGcu--UUGUaa--GGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 128492 | 0.67 | 0.991096 |
Target: 5'- aGCAGACGuuuccGGCGAucAGCGUggCGuGCGGCa -3' miRNA: 3'- -UGUCUGC-----UUGCU--UUGUAagGC-CGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 147481 | 0.67 | 0.992247 |
Target: 5'- gGCGGAgggGAGCGggGCGgcgCCggagggGGCGGCg -3' miRNA: 3'- -UGUCUg--CUUGCuuUGUaa-GG------CCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 20252 | 0.67 | 0.992981 |
Target: 5'- -gGGACGAaguGCGAAcgcuucGCGUUcucacuucuuuuacCCGGCGGCc -3' miRNA: 3'- ugUCUGCU---UGCUU------UGUAA--------------GGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 148184 | 0.67 | 0.992247 |
Target: 5'- -gGGGgGcGCGggGCG-UCCGGCGGg -3' miRNA: 3'- ugUCUgCuUGCuuUGUaAGGCCGCUg -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 2271 | 0.67 | 0.994195 |
Target: 5'- gACAGcccgccGCGcucGGCGGAcCAcUCCGGCGGCc -3' miRNA: 3'- -UGUC------UGC---UUGCUUuGUaAGGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 25712 | 0.67 | 0.993277 |
Target: 5'- -uGGAgGAGCGGGAgGUgCgCGGUGACg -3' miRNA: 3'- ugUCUgCUUGCUUUgUAaG-GCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 142221 | 0.67 | 0.993277 |
Target: 5'- uGCAGGCccGCuucAUcgUCCGGCGGCa -3' miRNA: 3'- -UGUCUGcuUGcuuUGuaAGGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 52727 | 0.67 | 0.993277 |
Target: 5'- cGCGGACGGcGCGggGCccccgcUUCCGGauGCg -3' miRNA: 3'- -UGUCUGCU-UGCuuUGu-----AAGGCCgcUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 69591 | 0.67 | 0.993277 |
Target: 5'- cACGGGCGGcucuGCGAGGCGgucggccugUCgGGgGGCg -3' miRNA: 3'- -UGUCUGCU----UGCUUUGUa--------AGgCCgCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 15973 | 0.67 | 0.994195 |
Target: 5'- -gGGGCGuugguguCG-AugGUUCCGGCGAUu -3' miRNA: 3'- ugUCUGCuu-----GCuUugUAAGGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 81674 | 0.67 | 0.995009 |
Target: 5'- -aAGGCGucCGGAACGcaCUGGCGAUu -3' miRNA: 3'- ugUCUGCuuGCUUUGUaaGGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 66811 | 0.67 | 0.995009 |
Target: 5'- cACGGcCGAGCGggGCcggCCcgGGUGGCc -3' miRNA: 3'- -UGUCuGCUUGCuuUGuaaGG--CCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 139208 | 0.68 | 0.989813 |
Target: 5'- uGCGGACGAGCu--GCGga--GGCGGCa -3' miRNA: 3'- -UGUCUGCUUGcuuUGUaaggCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 126130 | 0.68 | 0.98319 |
Target: 5'- cGCGGACGAcggcgGCGAGGCcggcgCCGacacGCGGCg -3' miRNA: 3'- -UGUCUGCU-----UGCUUUGuaa--GGC----CGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 95074 | 0.68 | 0.98319 |
Target: 5'- gGCGG-CGGGCGGAGCAUUUCGaucGCG-Cg -3' miRNA: 3'- -UGUCuGCUUGCUUUGUAAGGC---CGCuG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 83265 | 0.68 | 0.98319 |
Target: 5'- gGCGGGCG-ACGGAggGgGUUCgGGCGGg -3' miRNA: 3'- -UGUCUGCuUGCUU--UgUAAGgCCGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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