miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5793 5' -49.9 NC_001806.1 + 102078 0.66 0.996912
Target:  5'- cACGGGCGAugGccuccgaagGGACGgcUCCGGgGAUc -3'
miRNA:   3'- -UGUCUGCUugC---------UUUGUa-AGGCCgCUG- -5'
5793 5' -49.9 NC_001806.1 + 100781 0.66 0.995727
Target:  5'- gGCGGccagucgccGCGccccucGCGAGACg--CCGGCGACa -3'
miRNA:   3'- -UGUC---------UGCu-----UGCUUUGuaaGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 100301 0.7 0.964804
Target:  5'- cGCGGAaugcggcugggguugGGGCGcgGCAUggCCGGCGACg -3'
miRNA:   3'- -UGUCUg--------------CUUGCuuUGUAa-GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 98035 0.67 0.994195
Target:  5'- gGCcGGCGggUGAGcgcGCGgaugCuCGGCGACg -3'
miRNA:   3'- -UGuCUGCuuGCUU---UGUaa--G-GCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 96506 0.68 0.988241
Target:  5'- gGCGG-CGAACGggGgcccugcCAcUCCGGCGcCg -3'
miRNA:   3'- -UGUCuGCUUGCuuU-------GUaAGGCCGCuG- -5'
5793 5' -49.9 NC_001806.1 + 95486 0.7 0.953108
Target:  5'- cGCGGACGuGCgGGAGCGa--CGGCGGCu -3'
miRNA:   3'- -UGUCUGCuUG-CUUUGUaagGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 95074 0.68 0.98319
Target:  5'- gGCGG-CGGGCGGAGCAUUUCGaucGCG-Cg -3'
miRNA:   3'- -UGUCuGCUUGCUUUGUAAGGC---CGCuG- -5'
5793 5' -49.9 NC_001806.1 + 94930 0.66 0.995727
Target:  5'- uCAG-CGAauuGCGAuucuGGCucgcgUCCGGCGACc -3'
miRNA:   3'- uGUCuGCU---UGCU----UUGua---AGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 93564 0.74 0.854368
Target:  5'- -aGGACGAcaacGCGAcGCcgUUCGGCGGCc -3'
miRNA:   3'- ugUCUGCU----UGCUuUGuaAGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 91004 0.71 0.944312
Target:  5'- -gGGGCGGGCGcGACGg--CGGCGGCa -3'
miRNA:   3'- ugUCUGCUUGCuUUGUaagGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 85995 0.66 0.997811
Target:  5'- gGCAGGCG-ACG--GCGUcucCCGGgGGCg -3'
miRNA:   3'- -UGUCUGCuUGCuuUGUAa--GGCCgCUG- -5'
5793 5' -49.9 NC_001806.1 + 83265 0.68 0.98319
Target:  5'- gGCGGGCG-ACGGAggGgGUUCgGGCGGg -3'
miRNA:   3'- -UGUCUGCuUGCUU--UgUAAGgCCGCUg -5'
5793 5' -49.9 NC_001806.1 + 81674 0.67 0.995009
Target:  5'- -aAGGCGucCGGAACGcaCUGGCGAUu -3'
miRNA:   3'- ugUCUGCuuGCUUUGUaaGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 81355 0.66 0.996359
Target:  5'- cCAGGCGGcCGggGCGUcgCCcGCGAa -3'
miRNA:   3'- uGUCUGCUuGCuuUGUAa-GGcCGCUg -5'
5793 5' -49.9 NC_001806.1 + 77380 0.69 0.976395
Target:  5'- cCAGACGGGCGcGGGCG---CGGCGGCc -3'
miRNA:   3'- uGUCUGCUUGC-UUUGUaagGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 77295 0.71 0.944312
Target:  5'- cAUGGGCGGugGAGGaGUUCCGG-GGCg -3'
miRNA:   3'- -UGUCUGCUugCUUUgUAAGGCCgCUG- -5'
5793 5' -49.9 NC_001806.1 + 76295 0.66 0.995727
Target:  5'- cGCGGAgGAgauauccgcgguGCGcAACGacCCGGCGGCg -3'
miRNA:   3'- -UGUCUgCU------------UGCuUUGUaaGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 73136 0.72 0.911792
Target:  5'- gGCGGGCGAggACGAcgGGCccacgGUUCCGGCGuCc -3'
miRNA:   3'- -UGUCUGCU--UGCU--UUG-----UAAGGCCGCuG- -5'
5793 5' -49.9 NC_001806.1 + 69591 0.67 0.993277
Target:  5'- cACGGGCGGcucuGCGAGGCGgucggccugUCgGGgGGCg -3'
miRNA:   3'- -UGUCUGCU----UGCUUUGUa--------AGgCCgCUG- -5'
5793 5' -49.9 NC_001806.1 + 68340 0.81 0.503605
Target:  5'- gGCAGACGcGCGGGACug-CUGGCGGCc -3'
miRNA:   3'- -UGUCUGCuUGCUUUGuaaGGCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.