miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5793 5' -49.9 NC_001806.1 + 68254 0.69 0.981114
Target:  5'- -gGGGCGGACGAcccGGCGUUuCUGGCcACg -3'
miRNA:   3'- ugUCUGCUUGCU---UUGUAA-GGCCGcUG- -5'
5793 5' -49.9 NC_001806.1 + 66811 0.67 0.995009
Target:  5'- cACGGcCGAGCGggGCcggCCcgGGUGGCc -3'
miRNA:   3'- -UGUCuGCUUGCuuUGuaaGG--CCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 66427 0.67 0.991096
Target:  5'- uGCGGugGGGCGcccccGCAggUCCGGCuGCc -3'
miRNA:   3'- -UGUCugCUUGCuu---UGUa-AGGCCGcUG- -5'
5793 5' -49.9 NC_001806.1 + 65757 0.68 0.986819
Target:  5'- aACAGACGcGGCGG---GUUUCGGCGGg -3'
miRNA:   3'- -UGUCUGC-UUGCUuugUAAGGCCGCUg -5'
5793 5' -49.9 NC_001806.1 + 65635 0.68 0.986819
Target:  5'- -uGGGCGAGaGggGCc--CCGGCGGCc -3'
miRNA:   3'- ugUCUGCUUgCuuUGuaaGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 63927 0.67 0.991096
Target:  5'- uGCGGGCGAggAUGGcacuGACGUUgCUGGUGAUg -3'
miRNA:   3'- -UGUCUGCU--UGCU----UUGUAA-GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 63358 0.71 0.944312
Target:  5'- cCGGAUGGACGAucucgguGCAgagguuggagCCGGCGAUg -3'
miRNA:   3'- uGUCUGCUUGCUu------UGUaa--------GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 59882 0.7 0.960917
Target:  5'- cCGGACGGACGAGGagg-CCaGUGACg -3'
miRNA:   3'- uGUCUGCUUGCUUUguaaGGcCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 52869 0.69 0.976395
Target:  5'- gACAGGCGAccgccgGCGGcGACGUgccccuccucgUCCGGCGcGCg -3'
miRNA:   3'- -UGUCUGCU------UGCU-UUGUA-----------AGGCCGC-UG- -5'
5793 5' -49.9 NC_001806.1 + 52727 0.67 0.993277
Target:  5'- cGCGGACGGcGCGggGCccccgcUUCCGGauGCg -3'
miRNA:   3'- -UGUCUGCU-UGCuuUGu-----AAGGCCgcUG- -5'
5793 5' -49.9 NC_001806.1 + 52541 0.68 0.989813
Target:  5'- cCGGACGAcgugguccGCGggGCcucccCCGGaCGACa -3'
miRNA:   3'- uGUCUGCU--------UGCuuUGuaa--GGCC-GCUG- -5'
5793 5' -49.9 NC_001806.1 + 51588 0.67 0.995009
Target:  5'- cCAGGCGcugGGCGAgguggAGCugcCCGGCGGCc -3'
miRNA:   3'- uGUCUGC---UUGCU-----UUGuaaGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 51339 0.66 0.996359
Target:  5'- cGCGGGCguucccGAGCGgcGCAUcUUCGGCGGg -3'
miRNA:   3'- -UGUCUG------CUUGCuuUGUA-AGGCCGCUg -5'
5793 5' -49.9 NC_001806.1 + 48284 0.67 0.995009
Target:  5'- cCGGACG-ACGAcgcccccgaagaGGCGgggCUGGCGGCu -3'
miRNA:   3'- uGUCUGCuUGCU------------UUGUaa-GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 46505 0.67 0.994932
Target:  5'- cACAGACGAagaccucaACGAAcuccuugGCAUcaccaccaUCCGcGUGACg -3'
miRNA:   3'- -UGUCUGCU--------UGCUU-------UGUA--------AGGC-CGCUG- -5'
5793 5' -49.9 NC_001806.1 + 40028 0.72 0.923663
Target:  5'- aACGGACG-GCGAGcaugGCGUgCCGGCGuCa -3'
miRNA:   3'- -UGUCUGCuUGCUU----UGUAaGGCCGCuG- -5'
5793 5' -49.9 NC_001806.1 + 33191 1.11 0.008608
Target:  5'- gACAGACGAACGAAACAUUCCGGCGACg -3'
miRNA:   3'- -UGUCUGCUUGCUUUGUAAGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 29676 0.73 0.86237
Target:  5'- gGCGGGCGGGCGAGgaaaggGCGggCCGGgGAg -3'
miRNA:   3'- -UGUCUGCUUGCUU------UGUaaGGCCgCUg -5'
5793 5' -49.9 NC_001806.1 + 26996 0.66 0.997394
Target:  5'- aGCGGGCcGACcGGGCucgGUUCCGGCGcCg -3'
miRNA:   3'- -UGUCUGcUUGcUUUG---UAAGGCCGCuG- -5'
5793 5' -49.9 NC_001806.1 + 25903 0.7 0.960917
Target:  5'- -aAGGCGGGCG--GCggUCCGgGCGGCg -3'
miRNA:   3'- ugUCUGCUUGCuuUGuaAGGC-CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.