Results 61 - 77 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5793 | 5' | -49.9 | NC_001806.1 | + | 25712 | 0.67 | 0.993277 |
Target: 5'- -uGGAgGAGCGGGAgGUgCgCGGUGACg -3' miRNA: 3'- ugUCUgCUUGCUUUgUAaG-GCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 23917 | 0.69 | 0.973736 |
Target: 5'- cGCuGcCGGGCGAGGaccuggCCGGCGGCg -3' miRNA: 3'- -UGuCuGCUUGCUUUguaa--GGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 21471 | 0.7 | 0.957134 |
Target: 5'- -gGGACGAguACGAcgacgcagccGACGccgCCGGCGACc -3' miRNA: 3'- ugUCUGCU--UGCU----------UUGUaa-GGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 20726 | 0.68 | 0.985088 |
Target: 5'- cCGGGgGGGCGggGgg--CCGGCGGCc -3' miRNA: 3'- uGUCUgCUUGCuuUguaaGGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 20395 | 0.67 | 0.994195 |
Target: 5'- --cGGCGGGCGGGACcggggggcCCGGgGACg -3' miRNA: 3'- uguCUGCUUGCUUUGuaa-----GGCCgCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 20252 | 0.67 | 0.992981 |
Target: 5'- -gGGACGAaguGCGAAcgcuucGCGUUcucacuucuuuuacCCGGCGGCc -3' miRNA: 3'- ugUCUGCU---UGCUU------UGUAA--------------GGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 18627 | 0.66 | 0.997811 |
Target: 5'- uCGGACugGGACGcGAGCGUgugguccgaaCCGGCGGCc -3' miRNA: 3'- uGUCUG--CUUGC-UUUGUAa---------GGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 18373 | 0.75 | 0.783209 |
Target: 5'- gGCAGGCGGugGAGaagcGCAUuuUCCGGCaGCc -3' miRNA: 3'- -UGUCUGCUugCUU----UGUA--AGGCCGcUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 15973 | 0.67 | 0.994195 |
Target: 5'- -gGGGCGuugguguCG-AugGUUCCGGCGAUu -3' miRNA: 3'- ugUCUGCuu-----GCuUugUAAGGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 10082 | 0.73 | 0.892076 |
Target: 5'- uGCGGACGGccagGCGAGACGUccacguacUCgCGGCGcACg -3' miRNA: 3'- -UGUCUGCU----UGCUUUGUA--------AG-GCCGC-UG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 5372 | 0.66 | 0.997394 |
Target: 5'- gGCGcGGCGAGCGucuGACGgucugucUCUGGCGGu -3' miRNA: 3'- -UGU-CUGCUUGCu--UUGUa------AGGCCGCUg -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 4849 | 0.7 | 0.960917 |
Target: 5'- uCGGGCGu-CGGGAUcgUCCGGaCGGCc -3' miRNA: 3'- uGUCUGCuuGCUUUGuaAGGCC-GCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 4736 | 0.66 | 0.997811 |
Target: 5'- cGCGGcccCGGGcCGggGCccggucgCCGGCGGCg -3' miRNA: 3'- -UGUCu--GCUU-GCuuUGuaa----GGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 3284 | 0.71 | 0.929212 |
Target: 5'- cGCAGGCGGggcGCGucGGCGUg-CGGCGGCg -3' miRNA: 3'- -UGUCUGCU---UGCu-UUGUAagGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 2436 | 0.66 | 0.997394 |
Target: 5'- cGCAGGgGGccaaaGAGGCGgcccCCGGCGGCc -3' miRNA: 3'- -UGUCUgCUug---CUUUGUaa--GGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 2271 | 0.67 | 0.994195 |
Target: 5'- gACAGcccgccGCGcucGGCGGAcCAcUCCGGCGGCc -3' miRNA: 3'- -UGUC------UGC---UUGCUUuGUaAGGCCGCUG- -5' |
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5793 | 5' | -49.9 | NC_001806.1 | + | 1640 | 0.71 | 0.947505 |
Target: 5'- cGCAGGCGGcguGCGAGugggccuccuccucGCAgaagUCCGGCG-Cg -3' miRNA: 3'- -UGUCUGCU---UGCUU--------------UGUa---AGGCCGCuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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