miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5793 5' -49.9 NC_001806.1 + 20395 0.67 0.994195
Target:  5'- --cGGCGGGCGGGACcggggggcCCGGgGACg -3'
miRNA:   3'- uguCUGCUUGCUUUGuaa-----GGCCgCUG- -5'
5793 5' -49.9 NC_001806.1 + 98035 0.67 0.994195
Target:  5'- gGCcGGCGggUGAGcgcGCGgaugCuCGGCGACg -3'
miRNA:   3'- -UGuCUGCuuGCUU---UGUaa--G-GCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 2271 0.67 0.994195
Target:  5'- gACAGcccgccGCGcucGGCGGAcCAcUCCGGCGGCc -3'
miRNA:   3'- -UGUC------UGC---UUGCUUuGUaAGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 15973 0.67 0.994195
Target:  5'- -gGGGCGuugguguCG-AugGUUCCGGCGAUu -3'
miRNA:   3'- ugUCUGCuu-----GCuUugUAAGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 25712 0.67 0.993277
Target:  5'- -uGGAgGAGCGGGAgGUgCgCGGUGACg -3'
miRNA:   3'- ugUCUgCUUGCUUUgUAaG-GCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 142221 0.67 0.993277
Target:  5'- uGCAGGCccGCuucAUcgUCCGGCGGCa -3'
miRNA:   3'- -UGUCUGcuUGcuuUGuaAGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 52727 0.67 0.993277
Target:  5'- cGCGGACGGcGCGggGCccccgcUUCCGGauGCg -3'
miRNA:   3'- -UGUCUGCU-UGCuuUGu-----AAGGCCgcUG- -5'
5793 5' -49.9 NC_001806.1 + 69591 0.67 0.993277
Target:  5'- cACGGGCGGcucuGCGAGGCGgucggccugUCgGGgGGCg -3'
miRNA:   3'- -UGUCUGCU----UGCUUUGUa--------AGgCCgCUG- -5'
5793 5' -49.9 NC_001806.1 + 20252 0.67 0.992981
Target:  5'- -gGGACGAaguGCGAAcgcuucGCGUUcucacuucuuuuacCCGGCGGCc -3'
miRNA:   3'- ugUCUGCU---UGCUU------UGUAA--------------GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 147481 0.67 0.992247
Target:  5'- gGCGGAgggGAGCGggGCGgcgCCggagggGGCGGCg -3'
miRNA:   3'- -UGUCUg--CUUGCuuUGUaa-GG------CCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 148184 0.67 0.992247
Target:  5'- -gGGGgGcGCGggGCG-UCCGGCGGg -3'
miRNA:   3'- ugUCUgCuUGCuuUGUaAGGCCGCUg -5'
5793 5' -49.9 NC_001806.1 + 128492 0.67 0.991096
Target:  5'- aGCAGACGuuuccGGCGAucAGCGUggCGuGCGGCa -3'
miRNA:   3'- -UGUCUGC-----UUGCU--UUGUAagGC-CGCUG- -5'
5793 5' -49.9 NC_001806.1 + 66427 0.67 0.991096
Target:  5'- uGCGGugGGGCGcccccGCAggUCCGGCuGCc -3'
miRNA:   3'- -UGUCugCUUGCuu---UGUa-AGGCCGcUG- -5'
5793 5' -49.9 NC_001806.1 + 103938 0.67 0.991096
Target:  5'- cGCGGcUGAcGCGGAGCGUccgUUgGGCGACa -3'
miRNA:   3'- -UGUCuGCU-UGCUUUGUA---AGgCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 63927 0.67 0.991096
Target:  5'- uGCGGGCGAggAUGGcacuGACGUUgCUGGUGAUg -3'
miRNA:   3'- -UGUCUGCU--UGCU----UUGUAA-GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 119345 0.67 0.991096
Target:  5'- cCGGAgGAGCagcuGACGgcccCCGGCGGCg -3'
miRNA:   3'- uGUCUgCUUGcu--UUGUaa--GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 139208 0.68 0.989813
Target:  5'- uGCGGACGAGCu--GCGga--GGCGGCa -3'
miRNA:   3'- -UGUCUGCUUGcuuUGUaaggCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 52541 0.68 0.989813
Target:  5'- cCGGACGAcgugguccGCGggGCcucccCCGGaCGACa -3'
miRNA:   3'- uGUCUGCU--------UGCuuUGuaa--GGCC-GCUG- -5'
5793 5' -49.9 NC_001806.1 + 151273 0.68 0.988391
Target:  5'- cCGGGCGGugGggGCcggggCCggggGGCGGCg -3'
miRNA:   3'- uGUCUGCUugCuuUGuaa--GG----CCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 134444 0.68 0.988391
Target:  5'- gGCAG-CGAACGcguucgaauggGGACGUg-CGGCGACc -3'
miRNA:   3'- -UGUCuGCUUGC-----------UUUGUAagGCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.