Results 21 - 40 of 236 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5794 | 3' | -53.2 | NC_001806.1 | + | 84240 | 0.66 | 0.971902 |
Target: 5'- gUGcuGAAACAcGGCCGGgGGCgCGGgCg -3' miRNA: 3'- uGCuuUUUUGU-CUGGUCgCCG-GCCgG- -5' |
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5794 | 3' | -53.2 | NC_001806.1 | + | 112308 | 0.66 | 0.971617 |
Target: 5'- gACGAGcuuuuuccugggcAAGGCGGGCCAccGcCGGgaGGCCg -3' miRNA: 3'- -UGCUU-------------UUUUGUCUGGU--C-GCCggCCGG- -5' |
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5794 | 3' | -53.2 | NC_001806.1 | + | 127894 | 0.66 | 0.968955 |
Target: 5'- -aGAu-AGGCgcgGGugCAGCGGagcaCGGCCa -3' miRNA: 3'- ugCUuuUUUG---UCugGUCGCCg---GCCGG- -5' |
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5794 | 3' | -53.2 | NC_001806.1 | + | 53153 | 0.66 | 0.968955 |
Target: 5'- uACGAAAacgucugcguGAACAcGGCgaaugCAGC-GCCGGCCu -3' miRNA: 3'- -UGCUUU----------UUUGU-CUG-----GUCGcCGGCCGG- -5' |
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5794 | 3' | -53.2 | NC_001806.1 | + | 19642 | 0.66 | 0.968955 |
Target: 5'- gACGAGcagGAAGCGGuCCAcgcaacggucGCcGCCGGUCg -3' miRNA: 3'- -UGCUU---UUUUGUCuGGU----------CGcCGGCCGG- -5' |
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5794 | 3' | -53.2 | NC_001806.1 | + | 29442 | 0.66 | 0.968955 |
Target: 5'- cAUGGAGgccGAGgAGGCCgucagGGCgGGCaCGGCCg -3' miRNA: 3'- -UGCUUU---UUUgUCUGG-----UCG-CCG-GCCGG- -5' |
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5794 | 3' | -53.2 | NC_001806.1 | + | 23524 | 0.66 | 0.968955 |
Target: 5'- cCGAGGGccCcGACCcccugGGCGGCUGGCg -3' miRNA: 3'- uGCUUUUuuGuCUGG-----UCGCCGGCCGg -5' |
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5794 | 3' | -53.2 | NC_001806.1 | + | 20853 | 0.66 | 0.968648 |
Target: 5'- cGCGGgaccgccAGAGACAGACCGucagacGCucGCCGcGCCg -3' miRNA: 3'- -UGCU-------UUUUUGUCUGGU------CGc-CGGC-CGG- -5' |
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5794 | 3' | -53.2 | NC_001806.1 | + | 19878 | 0.66 | 0.968648 |
Target: 5'- --aAAAAGGCGGACCGGUGGgUuucugucgucggaGGCCc -3' miRNA: 3'- ugcUUUUUUGUCUGGUCGCCgG-------------CCGG- -5' |
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5794 | 3' | -53.2 | NC_001806.1 | + | 2549 | 0.66 | 0.968029 |
Target: 5'- gGCGAucGAGGCcaGGGCCcGCgggucaaacaugagGGCCGGUCg -3' miRNA: 3'- -UGCUu-UUUUG--UCUGGuCG--------------CCGGCCGG- -5' |
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5794 | 3' | -53.2 | NC_001806.1 | + | 147481 | 0.66 | 0.965793 |
Target: 5'- gGCGGAGggGAGCGGGgCGGCG-CCGGa- -3' miRNA: 3'- -UGCUUU--UUUGUCUgGUCGCcGGCCgg -5' |
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5794 | 3' | -53.2 | NC_001806.1 | + | 4657 | 0.66 | 0.965793 |
Target: 5'- cGCGGc--GGCuGGGCCGGCGGgCgCGGCg -3' miRNA: 3'- -UGCUuuuUUG-UCUGGUCGCC-G-GCCGg -5' |
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5794 | 3' | -53.2 | NC_001806.1 | + | 21293 | 0.66 | 0.965793 |
Target: 5'- gACGGGAGGGCc--CCcGCGGCgGGCa -3' miRNA: 3'- -UGCUUUUUUGucuGGuCGCCGgCCGg -5' |
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5794 | 3' | -53.2 | NC_001806.1 | + | 145254 | 0.66 | 0.965793 |
Target: 5'- aACGAcaGGGGGCGccCCAGaggcuaaGGUCGGCCa -3' miRNA: 3'- -UGCU--UUUUUGUcuGGUCg------CCGGCCGG- -5' |
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5794 | 3' | -53.2 | NC_001806.1 | + | 10094 | 0.66 | 0.965793 |
Target: 5'- gGCGAGAcGuccacguacucGCGGcGCaCGGCGcGUCGGCCg -3' miRNA: 3'- -UGCUUUuU-----------UGUC-UG-GUCGC-CGGCCGG- -5' |
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5794 | 3' | -53.2 | NC_001806.1 | + | 128534 | 0.66 | 0.965793 |
Target: 5'- uGCGGGcc-GCAG-CCAGaCGGC-GGCCc -3' miRNA: 3'- -UGCUUuuuUGUCuGGUC-GCCGgCCGG- -5' |
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5794 | 3' | -53.2 | NC_001806.1 | + | 119481 | 0.66 | 0.965793 |
Target: 5'- cGCGGAc---CGGGCguGCGGCCuguGGCg -3' miRNA: 3'- -UGCUUuuuuGUCUGguCGCCGG---CCGg -5' |
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5794 | 3' | -53.2 | NC_001806.1 | + | 44421 | 0.66 | 0.964802 |
Target: 5'- aGCGAcGAccgccccaacacauAGCAGGCC-GCGGgcCCGGCg -3' miRNA: 3'- -UGCUuUU--------------UUGUCUGGuCGCC--GGCCGg -5' |
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5794 | 3' | -53.2 | NC_001806.1 | + | 151524 | 0.66 | 0.962411 |
Target: 5'- uGCGGuuGGGACGGcGCCcgugggcccgGGCGGCCGGg- -3' miRNA: 3'- -UGCUu-UUUUGUC-UGG----------UCGCCGGCCgg -5' |
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5794 | 3' | -53.2 | NC_001806.1 | + | 135565 | 0.66 | 0.962411 |
Target: 5'- cCGGuc--ACGGACuCGGCcgccaGGUCGGCCg -3' miRNA: 3'- uGCUuuuuUGUCUG-GUCG-----CCGGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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