miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5794 5' -58.5 NC_001806.1 + 5675 0.67 0.773194
Target:  5'- aGGGcGGGUGgguccgCGCCc-CGCCCCgcaUGGc -3'
miRNA:   3'- -CCCuCCUACa-----GCGGcuGCGGGGa--ACC- -5'
5794 5' -58.5 NC_001806.1 + 90241 0.67 0.773194
Target:  5'- cGGcGAuuccGAcGUCGCCGugGCGCCCCUggucgUGGg -3'
miRNA:   3'- -CC-CUc---CUaCAGCGGC--UGCGGGGA-----ACC- -5'
5794 5' -58.5 NC_001806.1 + 27902 0.67 0.773194
Target:  5'- uGGGGGAaucGUCaCUGcCGCCCCUuUGGg -3'
miRNA:   3'- cCCUCCUa--CAGcGGCuGCGGGGA-ACC- -5'
5794 5' -58.5 NC_001806.1 + 24719 0.68 0.764081
Target:  5'- cGGAGGGacuuuUG-CGCCcGCGCCCUgcUGGa -3'
miRNA:   3'- cCCUCCU-----ACaGCGGcUGCGGGGa-ACC- -5'
5794 5' -58.5 NC_001806.1 + 39132 0.68 0.762245
Target:  5'- -aGAGGAUGauggaacagcagCGCCcgcagacgcccGACaGCCCCUUGGa -3'
miRNA:   3'- ccCUCCUACa-----------GCGG-----------CUG-CGGGGAACC- -5'
5794 5' -58.5 NC_001806.1 + 32944 0.68 0.744598
Target:  5'- cGGGccguuguGGGGccccggGCCGGgGCCCCUUGGg -3'
miRNA:   3'- -CCC-------UCCUacag--CGGCUgCGGGGAACC- -5'
5794 5' -58.5 NC_001806.1 + 43729 0.68 0.726618
Target:  5'- gGGGGGGAuUGgggUGaCCGagGCGCCcuCCUUGGg -3'
miRNA:   3'- -CCCUCCU-ACa--GC-GGC--UGCGG--GGAACC- -5'
5794 5' -58.5 NC_001806.1 + 126872 0.68 0.726618
Target:  5'- uGGAGGAcGgCGCCGGgGCUCUcgGGg -3'
miRNA:   3'- cCCUCCUaCaGCGGCUgCGGGGaaCC- -5'
5794 5' -58.5 NC_001806.1 + 142119 0.68 0.717041
Target:  5'- cGGGAGuGggGUCGUCGGCGUCUgCUuuuugUGGc -3'
miRNA:   3'- -CCCUC-CuaCAGCGGCUGCGGG-GA-----ACC- -5'
5794 5' -58.5 NC_001806.1 + 2661 0.69 0.707396
Target:  5'- aGGGcGGcgGcCGCgGGCGCCgCCgugUGGc -3'
miRNA:   3'- -CCCuCCuaCaGCGgCUGCGG-GGa--ACC- -5'
5794 5' -58.5 NC_001806.1 + 13159 0.69 0.678136
Target:  5'- cGGGGGGAUG-CGCagcgggagGGCGUacuuacaggagCCCUUGGc -3'
miRNA:   3'- -CCCUCCUACaGCGg-------CUGCG-----------GGGAACC- -5'
5794 5' -58.5 NC_001806.1 + 128988 0.69 0.678136
Target:  5'- gGGGGGGAUuUgGCCGAaugggUGCCCCg-GGu -3'
miRNA:   3'- -CCCUCCUAcAgCGGCU-----GCGGGGaaCC- -5'
5794 5' -58.5 NC_001806.1 + 16622 0.7 0.648557
Target:  5'- gGGGAgGGAUGUgGUCGuugGCCCCgauaagGGg -3'
miRNA:   3'- -CCCU-CCUACAgCGGCug-CGGGGaa----CC- -5'
5794 5' -58.5 NC_001806.1 + 148157 0.7 0.638663
Target:  5'- cGGGGGGcg--CGgCGGCGCCUCUgcgUGGg -3'
miRNA:   3'- -CCCUCCuacaGCgGCUGCGGGGA---ACC- -5'
5794 5' -58.5 NC_001806.1 + 50467 0.7 0.628764
Target:  5'- cGGGAGGAgcUGUuucgCGCCc-UGCCCCUgGGa -3'
miRNA:   3'- -CCCUCCU--ACA----GCGGcuGCGGGGAaCC- -5'
5794 5' -58.5 NC_001806.1 + 151240 0.7 0.628764
Target:  5'- uGGGAGGG-GUCaGCCc-CGCCCCccGGg -3'
miRNA:   3'- -CCCUCCUaCAG-CGGcuGCGGGGaaCC- -5'
5794 5' -58.5 NC_001806.1 + 4379 0.71 0.579442
Target:  5'- cGGGGGuccUCGCCGcCGCCCggggCUUGGg -3'
miRNA:   3'- cCCUCCuacAGCGGCuGCGGG----GAACC- -5'
5794 5' -58.5 NC_001806.1 + 24801 0.71 0.559916
Target:  5'- cGGGGGcccUGcCGCCGGCGCCgCCcgGGa -3'
miRNA:   3'- cCCUCCu--ACaGCGGCUGCGG-GGaaCC- -5'
5794 5' -58.5 NC_001806.1 + 37842 0.71 0.540577
Target:  5'- gGGGGGGGUGcUUGgCGcACGCCCCg--- -3'
miRNA:   3'- -CCCUCCUAC-AGCgGC-UGCGGGGaacc -5'
5794 5' -58.5 NC_001806.1 + 26834 0.71 0.540577
Target:  5'- gGGGAGGggG-CGCCGGaGCCCCc--- -3'
miRNA:   3'- -CCCUCCuaCaGCGGCUgCGGGGaacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.