miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5796 3' -55.6 NC_001806.1 + 151296 0.66 0.921172
Target:  5'- gGGGGCGGCggCGGugggccggGCCUCUggcgCCGGc -3'
miRNA:   3'- -CCCCGCUGaaGUUua------CGGAGG----GGCUu -5'
5796 3' -55.6 NC_001806.1 + 22274 0.66 0.921172
Target:  5'- uGGGGUGGCUcCAGAacCCgcgcguggUCCCCGGGg -3'
miRNA:   3'- -CCCCGCUGAaGUUUacGG--------AGGGGCUU- -5'
5796 3' -55.6 NC_001806.1 + 3515 0.66 0.909438
Target:  5'- cGGGCGGCgUCGGGgucgucGCC-CCCCGc- -3'
miRNA:   3'- cCCCGCUGaAGUUUa-----CGGaGGGGCuu -5'
5796 3' -55.6 NC_001806.1 + 39300 0.66 0.909438
Target:  5'- gGGGGUauguGAUcgCAcAUGCC-CCCCGGGa -3'
miRNA:   3'- -CCCCG----CUGaaGUuUACGGaGGGGCUU- -5'
5796 3' -55.6 NC_001806.1 + 85988 0.66 0.90321
Target:  5'- gGGGGuCGGCaggCGAcgGCgUCuCCCGGGg -3'
miRNA:   3'- -CCCC-GCUGaa-GUUuaCGgAG-GGGCUU- -5'
5796 3' -55.6 NC_001806.1 + 91037 0.66 0.902574
Target:  5'- cGGGCGGgUUCGAAcagcgccugGCCUCCgucauggCCGGAg -3'
miRNA:   3'- cCCCGCUgAAGUUUa--------CGGAGG-------GGCUU- -5'
5796 3' -55.6 NC_001806.1 + 86387 0.66 0.896744
Target:  5'- cGGGGCGcucgGCUaacgCGGcgGCCgCUCCGGAg -3'
miRNA:   3'- -CCCCGC----UGAa---GUUuaCGGaGGGGCUU- -5'
5796 3' -55.6 NC_001806.1 + 77055 0.66 0.887987
Target:  5'- cGGGGCugcgagcccagcggGACUaCGAGcGCCUUCCCGc- -3'
miRNA:   3'- -CCCCG--------------CUGAaGUUUaCGGAGGGGCuu -5'
5796 3' -55.6 NC_001806.1 + 148244 0.67 0.86857
Target:  5'- gGGGGCGcgaUCAGGUuacgcccCCUCCCCGGc -3'
miRNA:   3'- -CCCCGCugaAGUUUAc------GGAGGGGCUu -5'
5796 3' -55.6 NC_001806.1 + 105143 0.67 0.864037
Target:  5'- gGGGGCGGCcgugccgccccaGGGUGCCgagCCCCaGAGc -3'
miRNA:   3'- -CCCCGCUGaag---------UUUACGGa--GGGG-CUU- -5'
5796 3' -55.6 NC_001806.1 + 79142 0.67 0.853165
Target:  5'- cGGGCGGCcgUUCGAc-GCCUCCCUc-- -3'
miRNA:   3'- cCCCGCUG--AAGUUuaCGGAGGGGcuu -5'
5796 3' -55.6 NC_001806.1 + 99977 0.68 0.836944
Target:  5'- -cGGCGcGCcUCGA--GCCUCCCCGGGg -3'
miRNA:   3'- ccCCGC-UGaAGUUuaCGGAGGGGCUU- -5'
5796 3' -55.6 NC_001806.1 + 136366 0.68 0.836944
Target:  5'- cGGGGcCGGCgcgcUCcGcgGCCUCCgCGAc -3'
miRNA:   3'- -CCCC-GCUGa---AGuUuaCGGAGGgGCUu -5'
5796 3' -55.6 NC_001806.1 + 89058 0.68 0.836944
Target:  5'- gGGGGCGcGCUUgAGGUGaCCgucgugcaCCCCGGc -3'
miRNA:   3'- -CCCCGC-UGAAgUUUAC-GGa-------GGGGCUu -5'
5796 3' -55.6 NC_001806.1 + 57053 0.68 0.802288
Target:  5'- cGGGGCccccGGCUgc--GUGCCgggcUCCCCGAGa -3'
miRNA:   3'- -CCCCG----CUGAaguuUACGG----AGGGGCUU- -5'
5796 3' -55.6 NC_001806.1 + 21866 0.69 0.783985
Target:  5'- cGGGCGGCggCGAGgacccccgcgGCCUCCgCGGg -3'
miRNA:   3'- cCCCGCUGaaGUUUa---------CGGAGGgGCUu -5'
5796 3' -55.6 NC_001806.1 + 23542 0.69 0.755512
Target:  5'- uGGGCGGCUggCGGcgGCagcCCCCGGGg -3'
miRNA:   3'- cCCCGCUGAa-GUUuaCGga-GGGGCUU- -5'
5796 3' -55.6 NC_001806.1 + 119566 0.69 0.749689
Target:  5'- gGGGGCGGCUgacgCAGAUGCggugCUggcgggucuggagccCCCCGGc -3'
miRNA:   3'- -CCCCGCUGAa---GUUUACG----GA---------------GGGGCUu -5'
5796 3' -55.6 NC_001806.1 + 111560 0.7 0.695826
Target:  5'- uGGGGUGGa-UCuua-GCCUCCCCGGg -3'
miRNA:   3'- -CCCCGCUgaAGuuuaCGGAGGGGCUu -5'
5796 3' -55.6 NC_001806.1 + 22691 0.71 0.665122
Target:  5'- uGGGGCGGCUguccgccgCGcccGCCUCCCCc-- -3'
miRNA:   3'- -CCCCGCUGAa-------GUuuaCGGAGGGGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.