miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5796 5' -54 NC_001806.1 + 24584 0.66 0.966425
Target:  5'- ---cCGGA--CUUCugCGAGGAggAGGCCCa -3'
miRNA:   3'- cuaaGCCUuaGAGG--GCUCCU--UCCGGG- -5'
5796 5' -54 NC_001806.1 + 25514 0.66 0.966425
Target:  5'- gGAgcgCGGGAcg-CgCCGGGGAGGGCUg -3'
miRNA:   3'- -CUaa-GCCUUagaG-GGCUCCUUCCGGg -5'
5796 5' -54 NC_001806.1 + 72078 0.66 0.966425
Target:  5'- -cUUCGGGGag-CCCGcGGcGGGCCUg -3'
miRNA:   3'- cuAAGCCUUagaGGGCuCCuUCCGGG- -5'
5796 5' -54 NC_001806.1 + 88638 0.66 0.963121
Target:  5'- aGAUgccgCGGAAcgaCgcgCCCGGGGAcucgcgcaGGGCCg -3'
miRNA:   3'- -CUAa---GCCUUa--Ga--GGGCUCCU--------UCCGGg -5'
5796 5' -54 NC_001806.1 + 95431 0.66 0.963121
Target:  5'- ---gCGGg----CCCGGGGGgcagGGGCCCg -3'
miRNA:   3'- cuaaGCCuuagaGGGCUCCU----UCCGGG- -5'
5796 5' -54 NC_001806.1 + 91257 0.66 0.962434
Target:  5'- --cUCGGcccuccAUCUCaCCGAGGuggacgacgccGGCCCg -3'
miRNA:   3'- cuaAGCCu-----UAGAG-GGCUCCuu---------CCGGG- -5'
5796 5' -54 NC_001806.1 + 29127 0.66 0.959597
Target:  5'- gGAUggGGGGgcggUCUCGGGGggGaGCCCc -3'
miRNA:   3'- -CUAagCCUUag--AGGGCUCCuuC-CGGG- -5'
5796 5' -54 NC_001806.1 + 93884 0.66 0.955848
Target:  5'- --gUCGGcggg-CCCGcGGGAGGCCg -3'
miRNA:   3'- cuaAGCCuuagaGGGCuCCUUCCGGg -5'
5796 5' -54 NC_001806.1 + 115075 0.66 0.955848
Target:  5'- ---gCGGGAaaccgCCUGGGGccGGCCCa -3'
miRNA:   3'- cuaaGCCUUaga--GGGCUCCuuCCGGG- -5'
5796 5' -54 NC_001806.1 + 68118 0.66 0.955848
Target:  5'- ---cCGcGGUCUCCCGuccGAGGCCCc -3'
miRNA:   3'- cuaaGCcUUAGAGGGCuccUUCCGGG- -5'
5796 5' -54 NC_001806.1 + 13497 0.66 0.951869
Target:  5'- -cUUCGGAggC-CCCGcggacaaucuGGggGGCCUc -3'
miRNA:   3'- cuAAGCCUuaGaGGGCu---------CCuuCCGGG- -5'
5796 5' -54 NC_001806.1 + 150797 0.66 0.951869
Target:  5'- uGGUgCGGAG-CUCCCGGgagcuccgcGGAAGaCCCa -3'
miRNA:   3'- -CUAaGCCUUaGAGGGCU---------CCUUCcGGG- -5'
5796 5' -54 NC_001806.1 + 74354 0.66 0.951869
Target:  5'- ---cUGGAcgCcCCCGAGGAccuggcGGCCUg -3'
miRNA:   3'- cuaaGCCUuaGaGGGCUCCUu-----CCGGG- -5'
5796 5' -54 NC_001806.1 + 55248 0.66 0.951869
Target:  5'- ---aCGGAggGUCggcgCCCG-GGccGGCCCc -3'
miRNA:   3'- cuaaGCCU--UAGa---GGGCuCCuuCCGGG- -5'
5796 5' -54 NC_001806.1 + 35105 0.66 0.951869
Target:  5'- ---cCGGggUUauaaaaggcgcgUCCCGuGGAcgcGGCCCu -3'
miRNA:   3'- cuaaGCCuuAG------------AGGGCuCCUu--CCGGG- -5'
5796 5' -54 NC_001806.1 + 130471 0.67 0.947657
Target:  5'- ---cCGGGA--UCCCGAGGcgucgcugccGGCCCa -3'
miRNA:   3'- cuaaGCCUUagAGGGCUCCuu--------CCGGG- -5'
5796 5' -54 NC_001806.1 + 127678 0.67 0.947657
Target:  5'- --gUCGGAAUCUCCguaccgguCGAGcu-GGCCg -3'
miRNA:   3'- cuaAGCCUUAGAGG--------GCUCcuuCCGGg -5'
5796 5' -54 NC_001806.1 + 117546 0.67 0.943208
Target:  5'- ---gCGGAaacgAUCUCCU--GGGAGGCCa -3'
miRNA:   3'- cuaaGCCU----UAGAGGGcuCCUUCCGGg -5'
5796 5' -54 NC_001806.1 + 1701 0.67 0.943208
Target:  5'- --gUCGGuGGUC-CCCGAGGccGccGCCCg -3'
miRNA:   3'- cuaAGCC-UUAGaGGGCUCCuuC--CGGG- -5'
5796 5' -54 NC_001806.1 + 106853 0.67 0.938519
Target:  5'- ---gCGGAGUUuuUCUCGGGGGacgcGGGCgCCg -3'
miRNA:   3'- cuaaGCCUUAG--AGGGCUCCU----UCCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.