miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5803 3' -61.1 NC_001806.1 + 96607 0.67 0.641737
Target:  5'- ---aGCCGCCGCGccccGCCGGCGAc- -3'
miRNA:   3'- cuacCGGCGGCGCugc-CGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 21600 0.67 0.661411
Target:  5'- ---aGCCGCCGCGgagacgucgucACGGCCGgugGCGGc- -3'
miRNA:   3'- cuacCGGCGGCGC-----------UGCCGGC---UGCUac -5'
5803 3' -61.1 NC_001806.1 + 23233 0.67 0.661411
Target:  5'- --cGGaCGCCGcCGACGcGCUGGCGGc- -3'
miRNA:   3'- cuaCCgGCGGC-GCUGC-CGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 70839 0.67 0.641737
Target:  5'- --cGGCCugcuaucaaGCCGCGgcGCGGCCG-CGGg- -3'
miRNA:   3'- cuaCCGG---------CGGCGC--UGCCGGCuGCUac -5'
5803 3' -61.1 NC_001806.1 + 3086 0.68 0.602362
Target:  5'- --aGGuCCGCgGCGGCGGCgGcCGcgGa -3'
miRNA:   3'- cuaCC-GGCGgCGCUGCCGgCuGCuaC- -5'
5803 3' -61.1 NC_001806.1 + 70155 0.68 0.602362
Target:  5'- --cGGCCGcCCGgGGCGGCCu-CGGc- -3'
miRNA:   3'- cuaCCGGC-GGCgCUGCCGGcuGCUac -5'
5803 3' -61.1 NC_001806.1 + 127753 0.68 0.602362
Target:  5'- gGcgGGCUGCCgggugcgggccuGUGGCGGCCGucucGCGAUc -3'
miRNA:   3'- -CuaCCGGCGG------------CGCUGCCGGC----UGCUAc -5'
5803 3' -61.1 NC_001806.1 + 34532 0.68 0.606292
Target:  5'- cGcgGGCCgggccgcucguaagaGCCGCGAccCGGCCGcCGggGa -3'
miRNA:   3'- -CuaCCGG---------------CGGCGCU--GCCGGCuGCuaC- -5'
5803 3' -61.1 NC_001806.1 + 2741 0.68 0.592553
Target:  5'- gGcgGGCCGgCGCGAcaCGGCC-ACGGg- -3'
miRNA:   3'- -CuaCCGGCgGCGCU--GCCGGcUGCUac -5'
5803 3' -61.1 NC_001806.1 + 56855 0.68 0.58277
Target:  5'- --gGGCgGCCGCGGCGGgCCcacCGAUc -3'
miRNA:   3'- cuaCCGgCGGCGCUGCC-GGcu-GCUAc -5'
5803 3' -61.1 NC_001806.1 + 47554 0.68 0.56331
Target:  5'- --cGGCCacCCGCGACGGCCu-CGGg- -3'
miRNA:   3'- cuaCCGGc-GGCGCUGCCGGcuGCUac -5'
5803 3' -61.1 NC_001806.1 + 84229 0.68 0.552679
Target:  5'- uGAUGGCCaCCGUGcugaaacACGGCCGgggGCGcgGg -3'
miRNA:   3'- -CUACCGGcGGCGC-------UGCCGGC---UGCuaC- -5'
5803 3' -61.1 NC_001806.1 + 1715 0.68 0.56331
Target:  5'- --aGGCCGCCGCc-CGGCCGuccaGCGccGg -3'
miRNA:   3'- cuaCCGGCGGCGcuGCCGGC----UGCuaC- -5'
5803 3' -61.1 NC_001806.1 + 4639 0.69 0.534466
Target:  5'- --cGGCCGugacgacgucuCCGCGGCggcugGGCCGGCGGg- -3'
miRNA:   3'- cuaCCGGC-----------GGCGCUG-----CCGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 16488 0.69 0.534466
Target:  5'- gGggGGCuUGCCGCcGCGGCUGAUGGc- -3'
miRNA:   3'- -CuaCCG-GCGGCGcUGCCGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 72823 0.69 0.524964
Target:  5'- ----cCCGCCGCagaGGCGGCCGAagaaGAUGa -3'
miRNA:   3'- cuaccGGCGGCG---CUGCCGGCUg---CUAC- -5'
5803 3' -61.1 NC_001806.1 + 41229 0.69 0.524964
Target:  5'- aGUGGCCcaggGCCuCGugGaGCCGGCGAa- -3'
miRNA:   3'- cUACCGG----CGGcGCugC-CGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 23470 0.69 0.514588
Target:  5'- --gGGCCGCCGCGGCGcaggcccGCCcGCGccccGUGg -3'
miRNA:   3'- cuaCCGGCGGCGCUGC-------CGGcUGC----UAC- -5'
5803 3' -61.1 NC_001806.1 + 89582 0.69 0.506161
Target:  5'- --cGGCCGggcuuauggaCCGcCGGCGGCCGACa--- -3'
miRNA:   3'- cuaCCGGC----------GGC-GCUGCCGGCUGcuac -5'
5803 3' -61.1 NC_001806.1 + 143122 0.69 0.524964
Target:  5'- cGUGGCUGCCGgGAgGGgCCG-CgGAUGg -3'
miRNA:   3'- cUACCGGCGGCgCUgCC-GGCuG-CUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.