Results 41 - 60 of 99 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5803 | 3' | -61.1 | NC_001806.1 | + | 16488 | 0.69 | 0.534466 |
Target: 5'- gGggGGCuUGCCGCcGCGGCUGAUGGc- -3' miRNA: 3'- -CuaCCG-GCGGCGcUGCCGGCUGCUac -5' |
|||||||
5803 | 3' | -61.1 | NC_001806.1 | + | 72823 | 0.69 | 0.524964 |
Target: 5'- ----cCCGCCGCagaGGCGGCCGAagaaGAUGa -3' miRNA: 3'- cuaccGGCGGCG---CUGCCGGCUg---CUAC- -5' |
|||||||
5803 | 3' | -61.1 | NC_001806.1 | + | 143122 | 0.69 | 0.524964 |
Target: 5'- cGUGGCUGCCGgGAgGGgCCG-CgGAUGg -3' miRNA: 3'- cUACCGGCGGCgCUgCC-GGCuG-CUAC- -5' |
|||||||
5803 | 3' | -61.1 | NC_001806.1 | + | 41229 | 0.69 | 0.524964 |
Target: 5'- aGUGGCCcaggGCCuCGugGaGCCGGCGAa- -3' miRNA: 3'- cUACCGG----CGGcGCugC-CGGCUGCUac -5' |
|||||||
5803 | 3' | -61.1 | NC_001806.1 | + | 23470 | 0.69 | 0.514588 |
Target: 5'- --gGGCCGCCGCGGCGcaggcccGCCcGCGccccGUGg -3' miRNA: 3'- cuaCCGGCGGCGCUGC-------CGGcUGC----UAC- -5' |
|||||||
5803 | 3' | -61.1 | NC_001806.1 | + | 89582 | 0.69 | 0.506161 |
Target: 5'- --cGGCCGggcuuauggaCCGcCGGCGGCCGACa--- -3' miRNA: 3'- cuaCCGGC----------GGC-GCUGCCGGCUGcuac -5' |
|||||||
5803 | 3' | -61.1 | NC_001806.1 | + | 34532 | 0.68 | 0.606292 |
Target: 5'- cGcgGGCCgggccgcucguaagaGCCGCGAccCGGCCGcCGggGa -3' miRNA: 3'- -CuaCCGG---------------CGGCGCU--GCCGGCuGCuaC- -5' |
|||||||
5803 | 3' | -61.1 | NC_001806.1 | + | 127753 | 0.68 | 0.602362 |
Target: 5'- gGcgGGCUGCCgggugcgggccuGUGGCGGCCGucucGCGAUc -3' miRNA: 3'- -CuaCCGGCGG------------CGCUGCCGGC----UGCUAc -5' |
|||||||
5803 | 3' | -61.1 | NC_001806.1 | + | 70155 | 0.68 | 0.602362 |
Target: 5'- --cGGCCGcCCGgGGCGGCCu-CGGc- -3' miRNA: 3'- cuaCCGGC-GGCgCUGCCGGcuGCUac -5' |
|||||||
5803 | 3' | -61.1 | NC_001806.1 | + | 3086 | 0.68 | 0.602362 |
Target: 5'- --aGGuCCGCgGCGGCGGCgGcCGcgGa -3' miRNA: 3'- cuaCC-GGCGgCGCUGCCGgCuGCuaC- -5' |
|||||||
5803 | 3' | -61.1 | NC_001806.1 | + | 2741 | 0.68 | 0.592553 |
Target: 5'- gGcgGGCCGgCGCGAcaCGGCC-ACGGg- -3' miRNA: 3'- -CuaCCGGCgGCGCU--GCCGGcUGCUac -5' |
|||||||
5803 | 3' | -61.1 | NC_001806.1 | + | 56855 | 0.68 | 0.58277 |
Target: 5'- --gGGCgGCCGCGGCGGgCCcacCGAUc -3' miRNA: 3'- cuaCCGgCGGCGCUGCC-GGcu-GCUAc -5' |
|||||||
5803 | 3' | -61.1 | NC_001806.1 | + | 47554 | 0.68 | 0.56331 |
Target: 5'- --cGGCCacCCGCGACGGCCu-CGGg- -3' miRNA: 3'- cuaCCGGc-GGCGCUGCCGGcuGCUac -5' |
|||||||
5803 | 3' | -61.1 | NC_001806.1 | + | 1715 | 0.68 | 0.56331 |
Target: 5'- --aGGCCGCCGCc-CGGCCGuccaGCGccGg -3' miRNA: 3'- cuaCCGGCGGCGcuGCCGGC----UGCuaC- -5' |
|||||||
5803 | 3' | -61.1 | NC_001806.1 | + | 84229 | 0.68 | 0.552679 |
Target: 5'- uGAUGGCCaCCGUGcugaaacACGGCCGgggGCGcgGg -3' miRNA: 3'- -CUACCGGcGGCGC-------UGCCGGC---UGCuaC- -5' |
|||||||
5803 | 3' | -61.1 | NC_001806.1 | + | 50238 | 0.67 | 0.631886 |
Target: 5'- cGUGGCCGcCCGCuaugcCGGCCGcAUGAc- -3' miRNA: 3'- cUACCGGC-GGCGcu---GCCGGC-UGCUac -5' |
|||||||
5803 | 3' | -61.1 | NC_001806.1 | + | 93993 | 0.67 | 0.631886 |
Target: 5'- aGAUcGG-CGCCGCGAgaUGGCCGcccCGGUGu -3' miRNA: 3'- -CUA-CCgGCGGCGCU--GCCGGCu--GCUAC- -5' |
|||||||
5803 | 3' | -61.1 | NC_001806.1 | + | 144958 | 0.67 | 0.628931 |
Target: 5'- --cGGCCcCCGUGGCGGCCcggcccggggccccGGCGGa- -3' miRNA: 3'- cuaCCGGcGGCGCUGCCGG--------------CUGCUac -5' |
|||||||
5803 | 3' | -61.1 | NC_001806.1 | + | 2074 | 0.67 | 0.622036 |
Target: 5'- cGAUGaGCCGCCGgucgcCGGCG-CUGGCGAg- -3' miRNA: 3'- -CUAC-CGGCGGC-----GCUGCcGGCUGCUac -5' |
|||||||
5803 | 3' | -61.1 | NC_001806.1 | + | 117758 | 0.67 | 0.631886 |
Target: 5'- cGUGG-CGUgGCGACGGCCGAg---- -3' miRNA: 3'- cUACCgGCGgCGCUGCCGGCUgcuac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home